View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_11 (Length: 342)
Name: NF17869_low_11
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 15916564 - 15916232
Alignment:
| Q |
10 |
agatgaatccagtgaatgtcagataaaactgctaaccattctagcctcagaggtgtatggaaaagcagtgatattttgaaatttgtcacagatgatgaac |
109 |
Q |
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| T |
15916564 |
agatgaatccagtgaatgtcagataaaactgctaaccattctagcctcagaggtgtatggaaaagcagtgatattttgaaatttgtcacagatgatgaac |
15916465 |
T |
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| Q |
110 |
tcttagccatagctaaatcaaaattgagatgaaattcagatatgacaccattgatcaatgtccccatacacgcctgtgaattttgaaaatatcggttgtt |
209 |
Q |
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| T |
15916464 |
tcttagccatagctaaatcaaaattgagatgaaattcagatatgacaccattgatcaatgtccccatacacgcctgtgaattttgaaaatatcggctgtt |
15916365 |
T |
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| Q |
210 |
tatttcaatccatataatccaaagcacatgtagaattgcagacaccataagttgctgcacgaacttattcccaattcccactctccccattattagactg |
309 |
Q |
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| T |
15916364 |
tatttcaatccatataatccaaagcacatgtagaattgcagacaccataagttgctgcacgaacttattcccaattcccactctccccattattagactg |
15916265 |
T |
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| Q |
310 |
tgacacttagaaagatctagctgctgatttgtt |
342 |
Q |
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| T |
15916264 |
tgacacttagaaagatctagctgctgatttgtt |
15916232 |
T |
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