View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_12 (Length: 327)
Name: NF17869_low_12
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 46890657 - 46890350
Alignment:
| Q |
1 |
cattccaaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgctccttgcttgcttgttcaaagccctgctgccttcc |
100 |
Q |
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| T |
46890657 |
cattccaaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgctccttgcttgcttgttcaaagccctgctgccttcc |
46890558 |
T |
|
| Q |
101 |
aaattattagtttcaatggttattgcggagcactctctcgatttcaaggaatcatccctaaactgtgcaggatcttcatgaaggaatatacagttatctc |
200 |
Q |
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| T |
46890557 |
aaattattagtttcaatggttattgcggagcactctctcaatttcaaggaatcatccctaaactgtgcaggatcttcatgaaggaatatacagttatctc |
46890458 |
T |
|
| Q |
201 |
catatggacattcctccccattccaataattcttgcacagtttcatcgtttgtatgannnnnnnatcttcaccatgatttcccagctgcatccgaccttc |
300 |
Q |
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| T |
46890457 |
catatggacattcctccccattgcaataattcttgcacagtttcattgtttgtatgatttttttatctttagcatgatttcccagctgcatccgaccttc |
46890358 |
T |
|
| Q |
301 |
gctacgca |
308 |
Q |
| |
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|||||||| |
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| T |
46890357 |
gctacgca |
46890350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 46873180 - 46873089
Alignment:
| Q |
156 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattccaataattcttgcacagtttcatc |
247 |
Q |
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| T |
46873180 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacagtttcatc |
46873089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 46873243 - 46873181
Alignment:
| Q |
3 |
ttccaaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
65 |
Q |
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| T |
46873243 |
ttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgc |
46873181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 46899223 - 46899152
Alignment:
| Q |
39 |
gacacagcttagtcttccgataagtgctccttgcttgcttgttcaaagccctgctgccttccaaattattag |
110 |
Q |
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|||||||||||||||||| ||||| ||||||||| ||||||||| |||||| ||||||||||||| |||| |
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| T |
46899223 |
gacacagcttagtcttccaataagcactccttgctggcttgttcacagccctaatgccttccaaattgttag |
46899152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 46899109 - 46898982
Alignment:
| Q |
120 |
ttattgcggagcactctctcgatttcaaggaatcatccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctcccc |
219 |
Q |
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||||||| || |||||||| | |||| | ||| ||||||||||| |||||||| |||||||| || |||| ||||| ||||| ||||||||||| || |
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| T |
46899109 |
ttattgcagaacactctcttgttttccaagaagcatccctaaacctagcaggatcctcatgaagaaagctacacttatcaccataaggacattcctcacc |
46899010 |
T |
|
| Q |
220 |
attccaataattcttgcacagtttcatc |
247 |
Q |
| |
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| | |||| ||||| ||||| |||||| |
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| T |
46899009 |
aatgtaatacttcttacacagcttcatc |
46898982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 19846049 - 19845978
Alignment:
| Q |
39 |
gacacagcttagtcttccgataagtgctccttgcttgcttgttcaaagccctgctgccttccaaattattag |
110 |
Q |
| |
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||||||||||| |||||| ||||||| ||||||| ||||||||| || ||| | |||||||||||||||| |
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| T |
19846049 |
gacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattag |
19845978 |
T |
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