View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_15 (Length: 260)
Name: NF17869_low_15
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_15 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 49350238 - 49350006
Alignment:
| Q |
10 |
atgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgannnnnnnggcagagacatctataaatatatatgaag |
109 |
Q |
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| T |
49350238 |
atgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgatttttttggcagagacatctataaatatatatgaag |
49350139 |
T |
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| Q |
110 |
agcttgttaaggaaggtattaat-----taagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatc |
204 |
Q |
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| T |
49350138 |
agcttgttaaggaaggtattaatataattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatc |
49350039 |
T |
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| Q |
205 |
aaagagtgagtaaaagtggaaaatctatgtcccatgg |
241 |
Q |
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||| ||||||||||||||||| |||||||||||| |
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| T |
49350038 |
aaa----gagtaaaagtggaaaatttatgtcccatgg |
49350006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 49361998 - 49361925
Alignment:
| Q |
164 |
tactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagtaaaagtggaaaatctatgtcccatgg |
241 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
49361998 |
tactaagaatgatcctctactgccattgaagaacttagatcaa----ggagtaaaagtggaaaatttacgtcccatgg |
49361925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 250545 - 250320
Alignment:
| Q |
10 |
atgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaattt-gagctgannnnnnnggcagagacatctataaatatatatgaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
250545 |
atgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaattttgagctgatttttttggcagagacatctataaatatatatgaa |
250446 |
T |
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| Q |
109 |
gagcttgttaaggaaggtattaattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaag |
208 |
Q |
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| T |
250445 |
gagcttgttaaggaaggtattaattaagaag---tgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaa- |
250350 |
T |
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| Q |
209 |
agtgagtaaaagtggaaaatctatgtcccatgg |
241 |
Q |
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||||||||||||||||| |||||||||||| |
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| T |
250349 |
---gagtaaaagtggaaaatttatgtcccatgg |
250320 |
T |
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