View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_19 (Length: 222)
Name: NF17869_low_19
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 1176175 - 1176390
Alignment:
| Q |
7 |
tttcctactaatggatccatcatgaaacacattgcttctctaatagccttgctattattgatgtaatgattatagtcgaagttcaacacaaaaggtgcat |
106 |
Q |
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| T |
1176175 |
tttcctactaatggatccatcatgaaacacattgcttctctaatagccttgctattgttgatgtaatgattatagtcgaagttcaacacaaaaggtgcat |
1176274 |
T |
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| Q |
107 |
tggaaagtacagaagacactctaacctgtttcatagaattgccaacagttaaacaaaaagggattcagattccatacagtaaggaaattttgcaatcaat |
206 |
Q |
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| T |
1176275 |
tggaaagcacagaagacactctaacctgtttcatagaattaccaacagttaaacaaaaagggattcagattccatacagtaaggaaattttgtaatcaat |
1176374 |
T |
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| Q |
207 |
gcatcagaggcggttt |
222 |
Q |
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| T |
1176375 |
gcatcagaggcggttt |
1176390 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 38720084 - 38720138
Alignment:
| Q |
22 |
tccatcatgaaacacattgcttctctaatagccttgctattattgatgtaatgat |
76 |
Q |
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| T |
38720084 |
tccatcataaaacacatggcctctctaagagccttgctattattgatgtaatgat |
38720138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 30258282 - 30258220
Alignment:
| Q |
46 |
ctaatagccttgctattattgatgtaatgattatagtcgaagttcaacacaaaaggtgcattg |
108 |
Q |
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| T |
30258282 |
ctaagagccttgctattattgatgtattgatcacaatccagattcaacacaaaaggtgcattg |
30258220 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 5127739 - 5127788
Alignment:
| Q |
13 |
actaatggatccatcatgaaacacattgcttctctaatagccttgctatt |
62 |
Q |
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| T |
5127739 |
actactggatccatcagaaaacacatcgcttctctaacagccttgctatt |
5127788 |
T |
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