View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_2 (Length: 519)
Name: NF17869_low_2
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 37140520 - 37140010
Alignment:
| Q |
1 |
atacagaaaagataatgtgcccttagttaccttgctcttctattctgaaaccaaacttctacttgacgtggacgaagatttaattgctttgccagagcca |
100 |
Q |
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| T |
37140520 |
atacagaaaagataatgtgccctttgttaccttgctcttctattctgaaaccaaacttctacttgacgtggacgaagatttaattgctttgccagagcca |
37140421 |
T |
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| Q |
101 |
gtttctgtttctgcagattttggcaatacatgattaatgagatataccaaaaagaaaaatatttataaccagcaatatatataaacttatagtatagttc |
200 |
Q |
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| T |
37140420 |
gtttctgtttctgcagattttggcaatacatgattaatgagatataccaaaaagaaaaatatttataaccagcaatatatataaacttatagtatagttc |
37140321 |
T |
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| Q |
201 |
nnnnnnncatag--atgtatatcattccaatgttcttcccctaaaatttgagaaaaacggatgaaattgaaggttccccccatgtattgcatgataaaaa |
298 |
Q |
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| T |
37140320 |
tttttttcatagatatatatatcattccaatgttcttcccctaaaatttgagaaaaccggatgaaattgaaggttccccccatgtattgcatgataaaaa |
37140221 |
T |
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| Q |
299 |
tctttaactaataaaatgatcacta-ttttttccattctatttgttcaaatatctatagcataaaataagaaagagaaagtgaaacaaatgaaatgttgt |
397 |
Q |
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| T |
37140220 |
-----atctaataaaatgatcactatttttttccattctatttgttcaaatatctatagcataaaataagaaagagaaagtgaaacaaatgaaatgttgt |
37140126 |
T |
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| Q |
398 |
taagagagtgttattattacaggattgagagtggtgtgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttccttg |
497 |
Q |
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| T |
37140125 |
taagagagtgttattattacaggattgagagtggtgtgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttccttg |
37140026 |
T |
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| Q |
498 |
ttgacccatattcttc |
513 |
Q |
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| T |
37140025 |
ttgacccattttcttc |
37140010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 414 - 506
Target Start/End: Complemental strand, 23336039 - 23335947
Alignment:
| Q |
414 |
ttacaggattgagagtggtgtgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttccttgttgacccat |
506 |
Q |
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| T |
23336039 |
ttacaggattaagagtggtgtgttctttgaaactttcttcaagaaaagcagattgatctttagagagtcttagtttcttcctagttgacccat |
23335947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 23336215 - 23336164
Alignment:
| Q |
29 |
accttgctcttctattctgaaaccaaacttctacttgacgtggacgaagatt |
80 |
Q |
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| T |
23336215 |
accttgctcttctattttgaaaccaaacttcaacttgacgaggactaagatt |
23336164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 498
Target Start/End: Original strand, 25902258 - 25902322
Alignment:
| Q |
434 |
tgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttccttgt |
498 |
Q |
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| T |
25902258 |
tgttctttgaaactttcttcaagaaaagcagattgatccttagagagcctaagtttcttccttgt |
25902322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 25901857 - 25901941
Alignment:
| Q |
28 |
taccttgctcttctattctgaaaccaaacttctacttgacgtggacgaagatttaattgctttgccagagccagtttctgtttct |
112 |
Q |
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| T |
25901857 |
taccttgctcttctgttttggaaccagacttctacttggcgagggcgaagattgagttgttttgcaagagccagtttttgtttct |
25901941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 40299733 - 40299685
Alignment:
| Q |
408 |
ttattattacaggattgagagtggtgtgttctttgaagctatcttcaag |
456 |
Q |
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| T |
40299733 |
ttatgattacaggattgagagtgctgtgttctttgaagctttcttcaag |
40299685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 495
Target Start/End: Original strand, 41452397 - 41452460
Alignment:
| Q |
432 |
tgtgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttcct |
495 |
Q |
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| T |
41452397 |
tgtgttctttgaaggtttcttcaagaatagctgattggtctttagagagtctaagttttttcct |
41452460 |
T |
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