View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_7 (Length: 389)
Name: NF17869_low_7
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_7 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 49350181 - 49350570
Alignment:
| Q |
1 |
caaatttaagggagtgcatctttattgtacttgaagatacgccacaactcttcttcatttaagggaccagtatcaacatcaccattaatcttgaggcatt |
100 |
Q |
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| T |
49350181 |
caaatttaagggagtgcatctttcttggacttgaagttacgccacaactcttcttcatttaagggaccagtatcaacatcaccattaatcttgaggcatt |
49350280 |
T |
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| Q |
101 |
tcaaggaatagcataggtggaatacttcctccaaggttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49350281 |
tcaaggaatagcataggtagaatacttcctccaatgttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctt |
49350380 |
T |
|
| Q |
201 |
tgacattggttctttaagtgcctcagcttctccatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggc |
300 |
Q |
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| T |
49350381 |
tgacattggttctttaagtgcctcagcttctgcatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggc |
49350480 |
T |
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| Q |
301 |
ctaaattctcagagtcccccattttcattaatgcaa-tccattaatgtttaattttatattagagtaatttacttgacttcattctctgt |
389 |
Q |
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| T |
49350481 |
ctaaattctcagagtcccccattttcattaatgcaactccattaatgtttaattttatattagagtaatttacttgacttcattctctgt |
49350570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 250489 - 250599
Alignment:
| Q |
2 |
aaatttaagggagtgcatctttattgtacttgaagatacgccacaactcttcttcatttaagggaccagtatcaacatcaccattaatcttgaggcattt |
101 |
Q |
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| T |
250489 |
aaatttaagggagtgcatctttcttggacttgaagttacgccacaactcttcttcatttaagggaccagtatcaacatcaccattaatcttgaggcattt |
250588 |
T |
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| Q |
102 |
caaggaatagc |
112 |
Q |
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||||||||||| |
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| T |
250589 |
caaggaatagc |
250599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 13458049 - 13457934
Alignment:
| Q |
8 |
aagggagtgcatctttattgtacttgaagatacgccacaactcttcttcatttaagggaccagtatcaacatcaccattaatcttgaggcatttcaagga |
107 |
Q |
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| T |
13458049 |
aagggaatgcatctttcttagacttgaagtaacaccataactcttcatcatttaagggaccggtatcagcatcaccattaatcttgatgcatttcaggga |
13457950 |
T |
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| Q |
108 |
atagcataggtggaat |
123 |
Q |
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| T |
13457949 |
atagcataggtagaat |
13457934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 6786 - 6907
Alignment:
| Q |
19 |
tctttattgtacttgaagatacgccacaactcttcttcatttaagggaccagtatcaacatcaccattaatcttgaggcatttcaaggaatagcataggt |
118 |
Q |
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||||| ||| |||||||| || |||||||||||| ||||||||||||||||||||| || | |||||||||||||||||||||| ||||| | ||| | |
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| T |
6786 |
tctttcttggacttgaagcaacaccacaactcttcatcatttaagggaccagtatcagcaccgtcattaatcttgaggcatttcaatgaataacttagat |
6885 |
T |
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| Q |
119 |
ggaatacttcctccaaggttaa |
140 |
Q |
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|||| ||||||||| |||||| |
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| T |
6886 |
agaatgcttcctccacggttaa |
6907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 36663509 - 36663614
Alignment:
| Q |
41 |
gccacaactcttcttcatttaagggaccagtatcaacatcaccattaa------tcttgaggcatttcaaggaatagcataggtggaatacttcctccaa |
134 |
Q |
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||||||||||||| |||||||||||||| |||||| || || |||||| |||||||||||||||||||||| ||||| | |||| ||||||||| |
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| T |
36663509 |
gccacaactcttcatcatttaagggaccggtatcagcaccaacattaatcttaatcttgaggcatttcaaggaataacatagatagaatgcttcctccac |
36663608 |
T |
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| Q |
135 |
ggttaa |
140 |
Q |
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|||||| |
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| T |
36663609 |
ggttaa |
36663614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 36663734 - 36663822
Alignment:
| Q |
145 |
cacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctcagcttctccatccttt |
240 |
Q |
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||||||||| ||||||||||||||| || |||| ||| ||| ||||||||| |||| |||||||||||||||||||||||| | |||||| |
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| T |
36663734 |
cacaagtatttgattgaactaaagaagactgaagttgtgatataatctttg-------acatgggttctttaagtgcctcagcttctgcttccttt |
36663822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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