View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_8 (Length: 365)
Name: NF17869_low_8
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 34 - 350
Target Start/End: Complemental strand, 10612063 - 10611747
Alignment:
| Q |
34 |
aaactatggcaataaacaaatatagataatggtgcatcattacatgaaacttggttacttaagtttatcaggttctgaatgtttctgttcacttgtacat |
133 |
Q |
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| T |
10612063 |
aaaccatggcaataaacaaatatagataatggtgcatcattacatgaaacttggttacttaagtttatcaggttctgaatgtttctgttcacttgtacat |
10611964 |
T |
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| Q |
134 |
tctagtctacctcttctttgttcctttctctcaaaccattgagaaatnnnnnnnntgggaaacgaaactcgtgaccaacaaatactcgaaaaactttcat |
233 |
Q |
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| T |
10611963 |
tctagtctacctcttctttgttcctttctctcaaaccattgagaaataaaaaaaatgggaaacgaaactcgtgaccaacaaatactcgaaaaactttcat |
10611864 |
T |
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| Q |
234 |
cttatcacaatcaaaagactcaaactcaatctcatatgactcacaaccaaaagcacaagctgaaatcttttatgctaatcatatttaccaaccttgtcac |
333 |
Q |
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| T |
10611863 |
cttataacaatcaaaagactcacactcaatctcatatgactcacaaccaaaagcacaagctgaaatcttctatgctaatcatatttaccaaccttgtcac |
10611764 |
T |
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| Q |
334 |
catttacatgttcactg |
350 |
Q |
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| T |
10611763 |
catttacatgttcactg |
10611747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 10615246 - 10615179
Alignment:
| Q |
281 |
caaaagcacaagctgaaatcttttatgctaatcatatttaccaaccttgtcaccatttacatgttcac |
348 |
Q |
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| T |
10615246 |
caaaagcacaagctgaagtttgttatgctaatcatatttaccaaccttttcaccatttacatgttcac |
10615179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 10603939 - 10603858
Alignment:
| Q |
39 |
atggcaataaacaaatatagataatggtgcatcattacatgaaacttggttacttaagtttatcaggttctgaatgtttctg |
120 |
Q |
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| T |
10603939 |
atggcaataagaaaatatagttaatggtgcatcacgacatgtaacttggtcacttgagtttatcaggttttgaatgtttctg |
10603858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 10615392 - 10615342
Alignment:
| Q |
122 |
tcacttgtacattctagtctacctcttctttgttcctttctctcaaaccat |
172 |
Q |
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| T |
10615392 |
tcacttgtacattttagtctacctcttctttgtttctttctcttaaaccat |
10615342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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