View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_9 (Length: 362)
Name: NF17869_low_9
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 89 - 294
Target Start/End: Original strand, 48345654 - 48345854
Alignment:
| Q |
89 |
gtagaaccatatgataattaactatacaggttatataatcattttattaatttcttcactgttgtt--tcttgttattttgtaagtatgaattctaattc |
186 |
Q |
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| T |
48345654 |
gtagaaccatatgataattaactatacaggttatataatcattttattaatttcttcactgttgttgttcttattattttgtaagtatgaattctaattc |
48345753 |
T |
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| Q |
187 |
taattaaacttgaggtgattttggtatcttgcgctaactgccaacaacattaatcattatgaaacggttaaatttttcataacttannnnnnngataaat |
286 |
Q |
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| T |
48345754 |
taattaaacttgaggtgattttggtatcttgtgctaactgccaacaa-------cattatgaaacggttaaatttttcataacttatttttttgataaat |
48345846 |
T |
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| Q |
287 |
aaattttc |
294 |
Q |
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|||||||| |
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| T |
48345847 |
aaattttc |
48345854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 48345923 - 48345978
Alignment:
| Q |
291 |
tttctgtacaaaattagtcgctatctaactagttttgccacaaccaagcgtgtatg |
346 |
Q |
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| T |
48345923 |
tttctgtacaaaattagtcgctatctaactagttttgccacaaccaagcgtgtatg |
48345978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 48345584 - 48345635
Alignment:
| Q |
12 |
acctgtgtttgaaactactcatgttagtactaatcgtgctattcgtataatg |
63 |
Q |
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| T |
48345584 |
acctgtgtttgagactactcatgttagtactaatcgtgctattcgcataatg |
48345635 |
T |
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