View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1786_high_1 (Length: 559)
Name: NF1786_high_1
Description: NF1786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1786_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 11993054 - 11993604
Alignment:
| Q |
1 |
ttggcagttaaactaccttaggaccaagtggttccagtgtccaacacggtatacacatttgaggatgaggttccaaatagggtaattggtcattttgttt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11993054 |
ttggcagttaacctaccttaggaccaagtggttccagtgtccaacacggtatacacatttgaggatgaggttccaaatagggtaattggtcattttgttt |
11993153 |
T |
|
| Q |
101 |
cttaaatgtgtgaggcagtgttattatagtcattgaatgtatcaaactttaaaaacacccatgatttagttccgtttcagcttcttaattctctcgaggg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11993154 |
cttaaatgtgtgaggccgtgttattatagtcattgaatgtatcaaactttaaaaacacccatgatttagttctgtttcagcttcttaattctctcgaggg |
11993253 |
T |
|
| Q |
201 |
caccaaatcgatcttcattatccttttctttggcatcaccatctacttctccattattttcataatcgtctctctttctaatcagactttccaaaaacag |
300 |
Q |
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| T |
11993254 |
caccaaatcgatcttcattatccttttctttggcatcaccatctacttctccattattttcataatcgtctctctttctaatcagactttccaaaaacag |
11993353 |
T |
|
| Q |
301 |
tagaagtgactgatgattaaaatttaaaatcataaggtcaaacaacaaaagtgccaacatttgccttcaa--------aaacctgaatgcctaataaaac |
392 |
Q |
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| T |
11993354 |
tagaagtgactgatgattaaaatttaaaatcataaggtcaaacaacaaaagtgccaacatttgccttcaaaaactaacaaacctgaatgcctaataaaac |
11993453 |
T |
|
| Q |
393 |
acaatcggacattgttacaggatatacacattcatcctatcctaagcataataaaattgaatttcagtgcaaagaaacaatattatagaagtgcaatttc |
492 |
Q |
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| T |
11993454 |
acaatcggacattgttacaggatatacacattcatcctatcctatgcataataaaattgaatttcagtgcaaagaaacaatattatagaagtgcaatttc |
11993553 |
T |
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| Q |
493 |
catggaatataactcatatcaggtcaaacaaatgagaaagaaggattgtat |
543 |
Q |
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| T |
11993554 |
catggaatataactcatatcaggtcaaacaaatgaaaaagaaggattgtat |
11993604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 12014181 - 12014320
Alignment:
| Q |
164 |
atttagttccgtttcagcttcttaattctctcgagggcaccaaatcgatcttcattatccttttctttggcatcaccatctacttctccattattttcat |
263 |
Q |
| |
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| T |
12014181 |
atttagttccgtttcaggttcttaattctt--gagggcaccaaaccgattttcattatccttgtcttttgcatcaccatccacttctccattattttcat |
12014278 |
T |
|
| Q |
264 |
aatcgtctctctttctaatcagactttccaaaaacagtagaag |
306 |
Q |
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| T |
12014279 |
tctcgtctctctttctaatcaaac-tgccaaaaacagtagaag |
12014320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 3032199 - 3032114
Alignment:
| Q |
164 |
atttagttccgtttcagcttcttaattctctcgagggcaccaaatcgatcttcattatccttttctttggcatcaccatctacttc |
249 |
Q |
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||||| || ||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||| ||| || |||||||||| |
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| T |
3032199 |
atttaatttcgtttcagcttcttaattctctcaagggcaccaagccgactttcattatccttctcttttgcaccatcatctacttc |
3032114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 12025933 - 12026012
Alignment:
| Q |
76 |
aatagggtaattggtcattttgtttcttaaatgtgtgaggcagtgttattatagtcattgaatgtatcaaactttaaaaa |
155 |
Q |
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||||| |||| ||||| ||||| |||||||||||| |||| ||||| ||||||||| || | |||||||||||||||||| |
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| T |
12025933 |
aatagagtaaatggtcgttttggttcttaaatgtgcgaggaagtgtcattatagtccttaagtgtatcaaactttaaaaa |
12026012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 23360213 - 23360171
Alignment:
| Q |
89 |
gtcattttgtttcttaaatgtgtgaggcagtgttattatagtc |
131 |
Q |
| |
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||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
23360213 |
gtcattttggttcttaaatgtgtgagacaatgttattatagtc |
23360171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 23365034 - 23364992
Alignment:
| Q |
89 |
gtcattttgtttcttaaatgtgtgaggcagtgttattatagtc |
131 |
Q |
| |
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| T |
23365034 |
gtcattttggttcttaaatgtgtgagacaatgttattatagtc |
23364992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 23695512 - 23695470
Alignment:
| Q |
89 |
gtcattttgtttcttaaatgtgtgaggcagtgttattatagtc |
131 |
Q |
| |
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||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
23695512 |
gtcattttggttcttaaatgtgtgagacaatgttattatagtc |
23695470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 23713952 - 23713910
Alignment:
| Q |
89 |
gtcattttgtttcttaaatgtgtgaggcagtgttattatagtc |
131 |
Q |
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||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
23713952 |
gtcattttggttcttaaatgtgtgagacaatgttattatagtc |
23713910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 23732408 - 23732366
Alignment:
| Q |
89 |
gtcattttgtttcttaaatgtgtgaggcagtgttattatagtc |
131 |
Q |
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||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
23732408 |
gtcattttggttcttaaatgtgtgagacaatgttattatagtc |
23732366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 23750863 - 23750821
Alignment:
| Q |
89 |
gtcattttgtttcttaaatgtgtgaggcagtgttattatagtc |
131 |
Q |
| |
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||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
23750863 |
gtcattttggttcttaaatgtgtgagacaatgttattatagtc |
23750821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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