View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1786_high_2 (Length: 273)
Name: NF1786_high_2
Description: NF1786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1786_high_2 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 45421134 - 45420884
Alignment:
| Q |
7 |
gaaagaagtcattgaaaaacaattctaaccaagatttattgagtttgttgctaaaagaaaatagtgatgttagccaatctgcaaagacattaacaacacg |
106 |
Q |
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| T |
45421134 |
gaaagaagtcactgaaaaacaattcttaccaagatttattgagtttgttgctaaaagaaaatagtgatgttagccaatctgcaaagacattaacaacacg |
45421035 |
T |
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| Q |
107 |
agaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgccacacatgaagat |
206 |
Q |
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| T |
45421034 |
agaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgctacacatgaagat |
45420935 |
T |
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| Q |
207 |
tggcaaaatcaattaagagaagagattaaagaagttgtgggaaacaatgag |
257 |
Q |
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| T |
45420934 |
tggcaaaatcaattaagagaagagattaaagaagttgtgggaaacaatgag |
45420884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 37 - 269
Target Start/End: Complemental strand, 45412004 - 45411772
Alignment:
| Q |
37 |
aagatttattgagtttgttgctaaaagaaaatagtgatgttagccaatctgcaaagacattaacaacacgagaagtagttgatgaatgcaaaactttctt |
136 |
Q |
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| T |
45412004 |
aagatttattagggttgttgctaaaagaaaataatgaagatggaaaattgggaaagacacttacatcaagagaagtagttgatgaatgcaagactttctt |
45411905 |
T |
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| Q |
137 |
ctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgccacacatgaagattggcaaaatcaattaagagaagagattaaa |
236 |
Q |
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| T |
45411904 |
ctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgctacacatgaagattggcaaaatcaattaagagaagagattaaa |
45411805 |
T |
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| Q |
237 |
gaagttgtgggaaacaatgagcttcatctcact |
269 |
Q |
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| T |
45411804 |
gaagttgtgggaaacaatgagcttgatatcact |
45411772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 29801219 - 29801095
Alignment:
| Q |
117 |
gatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgccacacatgaagattggcaaaatc |
216 |
Q |
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| T |
29801219 |
gatgagtgcaagacctttttcattggtggtcatgagacaacagcattggctatttcttggactttgatgcttttagctatgcataaagattggcaaaatc |
29801120 |
T |
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| Q |
217 |
aattaagagaagagattaaagaagt |
241 |
Q |
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| T |
29801119 |
aattgagagatgagataagagaagt |
29801095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 26836201 - 26835951
Alignment:
| Q |
7 |
gaaagaagtcattgaaaaacaattctaaccaagatttattgagtttgttgctaaaagaaaatagtgatgttagccaatctgcaaagacattaacaacacg |
106 |
Q |
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| T |
26836201 |
gaaagaagtcactcaaaaacaattctaaacaagatttattgagcttcttggtaaaagaaaatagtgatgttagccaatctgcaaagacattaacaacacg |
26836102 |
T |
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| Q |
107 |
agaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgccacacatgaagat |
206 |
Q |
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| T |
26836101 |
agaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgccacacatgaagat |
26836002 |
T |
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| Q |
207 |
tggcaaaatcaattaagagaagagattaaagaagttgtgggaaacaatgag |
257 |
Q |
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| T |
26836001 |
tggcaaaatcaattaagagaagagattaaagaagttgtgggaaacaatgag |
26835951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 6973181 - 6973227
Alignment:
| Q |
117 |
gatgaatgcaaaactttcttctttggtggacatgaaacaacagcact |
163 |
Q |
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| T |
6973181 |
gatgaatgcaaaacattcttctttgctggacatgaaacaactgcact |
6973227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 64579 - 64449
Alignment:
| Q |
114 |
gttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgccacacatgaagattggcaaa |
213 |
Q |
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| T |
64579 |
gttgatgagtgcaagacatttttctttggtggatatgagaccacatcactttcaatcacatggactttgctgcttctagctttgcatgaagattggcaaa |
64480 |
T |
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| Q |
214 |
atcaattaagagaagagattaaagaagttgt |
244 |
Q |
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| T |
64479 |
accaattgagagatgaaattaaagaagttgt |
64449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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