View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1786_low_3 (Length: 250)

Name: NF1786_low_3
Description: NF1786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1786_low_3
NF1786_low_3
[»] chr1 (14 HSPs)
chr1 (1-239)||(41834803-41835043)
chr1 (1-98)||(35365567-35365664)
chr1 (1-105)||(6790681-6790784)
chr1 (1-81)||(9301064-9301144)
chr1 (5-81)||(32815215-32815291)
chr1 (1-47)||(38902210-38902256)
chr1 (1-82)||(39668889-39668970)
chr1 (5-105)||(2574862-2574962)
chr1 (1-41)||(3527726-3527766)
chr1 (66-105)||(9632764-9632803)
chr1 (70-102)||(13208110-13208142)
chr1 (1-41)||(38675505-38675545)
chr1 (70-102)||(39829592-39829624)
chr1 (65-101)||(51049796-51049832)
[»] chr4 (10 HSPs)
chr4 (2-105)||(43361830-43361933)
chr4 (2-104)||(16530169-16530271)
chr4 (26-104)||(4066367-4066445)
chr4 (26-104)||(21111740-21111816)
chr4 (5-55)||(22575366-22575416)
chr4 (5-96)||(35798964-35799057)
chr4 (11-88)||(2914744-2914821)
chr4 (26-101)||(27359493-27359568)
chr4 (2-79)||(50783585-50783662)
chr4 (26-98)||(9093647-9093719)
[»] chr2 (13 HSPs)
chr2 (5-105)||(3636373-3636473)
chr2 (5-87)||(18375510-18375592)
chr2 (1-98)||(13530585-13530682)
chr2 (1-54)||(14812316-14812369)
chr2 (1-101)||(44273528-44273628)
chr2 (1-47)||(34375283-34375329)
chr2 (1-101)||(2854401-2854501)
chr2 (1-49)||(7670183-7670231)
chr2 (1-42)||(7271087-7271128)
chr2 (5-98)||(30531489-30531580)
chr2 (1-54)||(37331809-37331862)
chr2 (1-49)||(31633507-31633555)
chr2 (1-101)||(37743745-37743845)
[»] chr3 (12 HSPs)
chr3 (2-105)||(42225954-42226056)
chr3 (1-98)||(27213977-27214074)
chr3 (3-99)||(35044118-35044214)
chr3 (5-106)||(7753111-7753212)
chr3 (1-101)||(44455065-44455165)
chr3 (5-103)||(54259978-54260076)
chr3 (7-106)||(29373172-29373269)
chr3 (5-86)||(7613163-7613242)
chr3 (4-54)||(49746638-49746688)
chr3 (70-107)||(3432530-3432567)
chr3 (5-49)||(4541352-4541396)
chr3 (1-49)||(50888871-50888919)
[»] scaffold0172 (1 HSPs)
scaffold0172 (2-99)||(19412-19509)
[»] chr7 (10 HSPs)
chr7 (26-104)||(7723171-7723249)
chr7 (7-104)||(23803406-23803503)
chr7 (17-94)||(46515459-46515536)
chr7 (1-42)||(7712520-7712561)
chr7 (17-94)||(41141190-41141267)
chr7 (5-100)||(42161548-42161643)
chr7 (25-79)||(23466214-23466268)
chr7 (1-42)||(24316294-24316335)
chr7 (1-98)||(33878199-33878296)
chr7 (26-98)||(10624925-10624997)
[»] scaffold0065 (1 HSPs)
scaffold0065 (9-105)||(49112-49208)
[»] chr5 (11 HSPs)
chr5 (1-47)||(39180399-39180445)
chr5 (2-98)||(10803385-10803481)
chr5 (1-44)||(3135641-3135684)
chr5 (10-79)||(12382582-12382651)
chr5 (10-82)||(606732-606804)
chr5 (5-49)||(13138548-13138592)
chr5 (1-86)||(10911082-10911165)
chr5 (16-106)||(28995855-28995945)
chr5 (21-101)||(1088272-1088352)
chr5 (23-87)||(8713769-8713833)
chr5 (3-79)||(10106950-10107026)
[»] chr8 (5 HSPs)
chr8 (1-42)||(6471195-6471236)
chr8 (27-86)||(32967694-32967753)
chr8 (1-101)||(27134581-27134682)
chr8 (37-106)||(34086547-34086616)
chr8 (1-54)||(41909205-41909258)
[»] scaffold0129 (1 HSPs)
scaffold0129 (10-104)||(25852-25946)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41834803 - 41835043
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41834803 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaatacttgttagc 41834902  T
Q  101 ataactgtaacatttattgaagaagattgaaacgaaggagccttgattgcgaagagtactagtagaat---gaagattcatgatcatttgctttaaatga 197  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||    
T  41834903 ataactgtaacatttattgaagaatattgaaacgaaggagccttgattgcgaagagtac-agtagaatgaagaagattcatgatcatttgctttaaatga 41835001  T
Q  198 tcggcaaaatgacagacctttgactaatcaaaatattttcat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41835002 tcggcaaaatgacagacctttgactaatcaaaatattttcat 41835043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 35365567 - 35365664
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 98  Q
    ||||||||||||| || |||| ||||||||||||| |||||| |||||| |||| ||||| ||| ||| |||||||||| | |||||  |||||||||    
T  35365567 attgtgtaattatgacatttacatatgtttgacttatattttcaagatataatttcttattatggatttcttaaacaattttcttagggcacttgtta 35365664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6790681 - 6790784
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagc 100  Q
    |||||||||||||||||||| ||||||||||| |||||||||  ||| | |||   ||||  |||||||||||||||||||||  | ||||||||| |||    
T  6790681 attgtgtaattattacttttttatatgtttgatttgtattttcgagacaaaatattttattttgaattccttaaacaatgtcc-caaaacacttgtcagc 6790779  T
Q  101 ataac 105  Q
    |||||    
T  6790780 ataac 6790784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9301064 - 9301144
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgt 81  Q
    ||||||||||||||||||||| || |||||||||| | |||||||| || |||| ||||||||| |||| ||||| |||||    
T  9301064 attgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataatgt 9301144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 32815215 - 32815291
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgt 81  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||  ||| |  ||| ||| |||||||||||    
T  32815215 tgtaattattacttttacatatgtttgacttgtatttttaagataaaatatctttttgtgagttctttaaacaatgt 32815291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38902210 - 38902256
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaaga 47  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  38902210 attgtgtaattatgacttttatatatgtttgacttgaattttcaaga 38902256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39668889 - 39668970
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtc 82  Q
    ||||||||||||||| |||||||| | |||||||| ||||||||||  |||||| |||  |||  ||||| |||||||||||    
T  39668889 attgtgtaattattatttttatatgtatttgacttatatttttaagtcacaatttctttcaatagattccataaacaatgtc 39668970  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 2574962 - 2574862
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 104  Q
    |||||||||||| |||| || |||||||||| | ||||  | | |  ||| || |||||  |||||||||||||||| |||||| |||||||||||||||    
T  2574962 tgtaattattacatttacatgtgtttgacttatgttttcgaaaaaacatttctcataatagattccttaaacaatgttcttagagcacttgttagcataa 2574863  T
Q  105 c 105  Q
    |    
T  2574862 c 2574862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3527726 - 3527766
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtattt 41  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  3527726 attgtgtagttatgacttttatatatgtttgacttgtattt 3527766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 9632764 - 9632803
Alignment:
Q  66 attccttaaacaatgtccttagaacacttgttagcataac 105  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  9632764 attccttaaacaatgtctttagaacatttgttagcataac 9632803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 13208110 - 13208142
Alignment:
Q  70 cttaaacaatgtccttagaacacttgttagcat 102  Q
    |||||||||||||||||| ||||||||||||||    
T  13208110 cttaaacaatgtccttaggacacttgttagcat 13208142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38675545 - 38675505
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtattt 41  Q
    ||||||||||||||| |||||||||||||||| || |||||    
T  38675545 attgtgtaattattatttttatatatgtttgatttatattt 38675505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 39829592 - 39829624
Alignment:
Q  70 cttaaacaatgtccttagaacacttgttagcat 102  Q
    |||||||||| ||||||||||||||||||||||    
T  39829592 cttaaacaatatccttagaacacttgttagcat 39829624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 51049832 - 51049796
Alignment:
Q  65 aattccttaaacaatgtccttagaacacttgttagca 101  Q
    |||||||||||||||  ||||||||||||||||||||    
T  51049832 aattccttaaacaatacccttagaacacttgttagca 51049796  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 43361830 - 43361933
Alignment:
Q  2 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagca 101  Q
    |||||||| ||||||||||| |  |||||||||| | ||||||||||| | || ||| ||||| |||||||||||||||| ||||| |||||||||||||    
T  43361830 ttgtgtaagtattacttttaaacgtgtttgacttatgtttttaagataaagtttcttttaatggattccttaaacaatgttcttaggacacttgttagca 43361929  T
Q  102 taac 105  Q
    ||||    
T  43361930 taac 43361933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 16530271 - 16530169
Alignment:
Q  2 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagca 101  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||| ||  |   |||||||| | |||||||||||||||||   ||||||||||||    
T  16530271 ttgtgtaattattacttttacatatgtttgacttatattttcaagataaaaaaaaaaataatgaaattcttaaacaatgtccttaatgcacttgttagca 16530172  T
Q  102 taa 104  Q
    |||    
T  16530171 taa 16530169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 4066445 - 4066367
Alignment:
Q  26 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 104  Q
    |||||||||| | |||| |||||| |||| ||||||||| ||| |||||||||||||||||  ||| ||||||||||||    
T  4066445 tgtttgacttatgttttcaagatataatttcttataatggatttcttaaacaatgtccttaagacatttgttagcataa 4066367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 21111816 - 21111740
Alignment:
Q  26 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 104  Q
    |||||||||| |||||| |||||| |||| |||||||||||  |||||||||||||| ||||  || ||||||||||||    
T  21111816 tgtttgacttatattttcaagataaaatttcttataatgaa--ccttaaacaatgtctttagggcatttgttagcataa 21111740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 22575416 - 22575366
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaatta 55  Q
    ||||||||| ||||||| || |||||||||||||||||||||||| |||||    
T  22575416 tgtaattatgacttttacatgtgtttgacttgtatttttaagataaaatta 22575366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 35799057 - 35798964
Alignment:
Q  5 tgtaattattacttttatatatgt--ttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgt 96  Q
    |||||||||||||||| || ||||  ||||| | |||||| || ||| |||| ||||||||| |||| ||||||||||  ||||||||||||||    
T  35799057 tgtaattattacttttttacatgtgtttgacatatattttcaaaataaaatttcttataatggattctttaaacaatgctcttagaacacttgt 35798964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 2914821 - 2914744
Alignment:
Q  11 tattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttaga 88  Q
    ||||||||||| || |||||||||| |  ||| |||||| ||||||| |||||| ||| ||||||||||| |||||||    
T  2914821 tattacttttacatgtgtttgacttatgctttcaagataaaattactaataatggatttcttaaacaatgcccttaga 2914744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 27359568 - 27359493
Alignment:
Q  26 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagca 101  Q
    ||||||| |||||||||||||||| |||| ||| |  | | |||||||||| |||| | |||||||||||||||||    
T  27359568 tgtttgatttgtatttttaagataaaatttcttttcgtaagttccttaaacgatgttcgtagaacacttgttagca 27359493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 50783585 - 50783662
Alignment:
Q  2 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaat 79  Q
    |||||||||||||||||||| || |||||||||  | |||| |||||| |||| | ||||| || || ||||||||||    
T  50783585 ttgtgtaattattacttttacatgtgtttgactaatgttttcaagataaaatttcatataacgagtttcttaaacaat 50783662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 9093647 - 9093719
Alignment:
Q  26 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 98  Q
    |||||||||| |||||| |||  | |||| ||| | |||  ||||||||||||||||||||| ||||||||||    
T  9093647 tgtttgacttatattttcaaggcaaaatttctttttatgggttccttaaacaatgtccttaggacacttgtta 9093719  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 3636473 - 3636373
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 104  Q
    ||||||||||||||||| || |||||||||| | | || |||||| |||| ||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  3636473 tgtaattattacttttacatttgtttgacttatgtgttcaagataaaatttcttataatagattccttaaacaatgcccttagggcacttgttagcataa 3636374  T
Q  105 c 105  Q
    |    
T  3636373 c 3636373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 18375510 - 18375592
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttag 87  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||| |  | ||||||||  | ||||||||||||| ||||||    
T  18375510 tgtaattattacttttatgtatgcttgacttatatttttaagataaatattcttataatagaatccttaaacaatgaccttag 18375592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 13530585 - 13530682
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 98  Q
    ||||||||||||| |||| ||||||||||||||||||||||| |||| | | ||  || |  || ||||||| |||||||||||||  ||||||||||    
T  13530585 attgtgtaattatgacttgtatatatgtttgacttgtattttcaagacaaactttttttttgtggattcctttaacaatgtccttaagacacttgtta 13530682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14812316 - 14812369
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 54  Q
    ||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||    
T  14812316 attgtgtaattataacttttacatatgtttgacttgtattttcaagataaaatt 14812369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44273528 - 44273628
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagc 100  Q
    ||||||||||| | | ||| | ||||||||||||||||||||||| ||| |||| ||| | |||||||  ||||||||| |  ||| |||||||||||||    
T  44273528 attgtgtaattgtcattttaacatatgtttgacttgtatttttaatataaaatttctttttatgaatttattaaacaatatatttaaaacacttgttagc 44273627  T
Q  101 a 101  Q
    |    
T  44273628 a 44273628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34375329 - 34375283
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaaga 47  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||    
T  34375329 attgtgtaattatgacatttatatatgtttgacttgtattttcaaga 34375283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2854401 - 2854501
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagc 100  Q
    |||||||| |||| ||||||| |||||||| ||||||||||| |||| | |||| |||    || ||||||||||| ||| ||||||  |||||||||||    
T  2854401 attgtgtagttatgacttttagatatgtttaacttgtattttcaagacaaaatttctttatgtggattccttaaacgatgcccttagggcacttgttagc 2854500  T
Q  101 a 101  Q
    |    
T  2854501 a 2854501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7670231 - 7670183
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagata 49  Q
    ||||| ||||||| ||||||  |||||||||||||||||||||||||||    
T  7670231 attgtataattatgacttttccatatgtttgacttgtatttttaagata 7670183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7271087 - 7271128
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttt 42  Q
    ||||||||||||| | |||||||||||||| |||||||||||    
T  7271087 attgtgtaattatgaattttatatatgtttaacttgtatttt 7271128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 30531580 - 30531489
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 98  Q
    ||||||||||| |||||||| |||||||||| || |||||||||| || |  |||| || |||| |||||||||| || |||||||| ||||||    
T  30531580 tgtaattattatttttatatctgtttgacttata-ttttaagataaaact-tttattataaatttcttaaacaatatctttagaacatttgtta 30531489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37331862 - 37331809
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 54  Q
    ||||||||||||| | ||| |||||| |||||||| ||||||||||||| ||||    
T  37331862 attgtgtaattatgattttaatatatatttgacttatatttttaagataaaatt 37331809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31633507 - 31633555
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagata 49  Q
    |||||||| ||||  |||||| |||||||||||||||||||| ||||||    
T  31633507 attgtgtagttatgccttttacatatgtttgacttgtattttcaagata 31633555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 37743745 - 37743845
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagc 100  Q
    |||||| | |||| |||||||||||||||| |||||||||||  | | | |||| ||| | |||||||  |||||||||   ||| ||||||||||||||    
T  37743745 attgtgcagttataacttttatatatgtttaacttgtattttcgaaacaaaatttcttttgatgaattttttaaacaatactcttggaacacttgttagc 37743844  T
Q  101 a 101  Q
    |    
T  37743845 a 37743845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 42226056 - 42225954
Alignment:
Q  2 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagca 101  Q
    ||||||||| |||||||||| ||||||| || || | |||| |||||| |||| ||||||||  ||||||||||||||||| |||| |||||||||||||    
T  42226056 ttgtgtaat-attacttttaaatatgttagatttatgttttcaagataaaatttcttataatagattccttaaacaatgtctttaggacacttgttagca 42225958  T
Q  102 taac 105  Q
    ||||    
T  42225957 taac 42225954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27213977 - 27214074
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 98  Q
    ||||| || |||| ||||||| ||||||||||||||||||||||||| | | || ||| |  ||  ||||||||||||||||||||||||||||||||    
T  27213977 attgtatagttatgacttttacatatgtttgacttgtatttttaagacaaagtttctttttgtgtgttccttaaacaatgtccttagaacacttgtta 27214074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 35044118 - 35044214
Alignment:
Q  3 tgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttag 99  Q
    ||||||||||||||||| | || ||||||||||   |||| |||||| |||| ||||||||| ||| ||||||||||| ||||||  ||||||||||    
T  35044118 tgtgtaattattactttcacatgtgtttgacttaggttttcaagataaaatttcttataatggatttcttaaacaatgcccttagggcacttgttag 35044214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 7753111 - 7753212
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 104  Q
    |||||||||||||||||||| ||||||| || | |||| |||||| || |  || || || ||||||||||||||  |||||  ||||||||||||||||    
T  7753111 tgtaattattacttttatatgtgtttgatttatgttttcaagataaaactttttttattggattccttaaacaatacccttaagacacttgttagcataa 7753210  T
Q  105 ct 106  Q
    ||    
T  7753211 ct 7753212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 44455165 - 44455065
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagc 100  Q
    ||||| || |||| |||||||| | ||||||||||||||||| |||| | |||| |||    ||| || ||||||||| |||||||||||||||||||||    
T  44455165 attgtatagttatgacttttatgtgtgtttgacttgtattttcaagacaaaatttctttctgtgagtttcttaaacaacgtccttagaacacttgttagc 44455066  T
Q  101 a 101  Q
    |    
T  44455065 a 44455065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 54259978 - 54260076
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcata 103  Q
    ||||||||||||||||| |   ||||||||| |||||| |||||| ||||  |||||||   || ||||||||||||| ||||||||||| ||| ||||    
T  54259978 tgtaattattacttttacactcgtttgacttatattttcaagataaaattttttataataggtttcttaaacaatgtctttagaacactttttaacata 54260076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 29373172 - 29373269
Alignment:
Q  7 taattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataact 106  Q
    ||||||| ||||||||||  ||||||||||||||||||||| | | || ||| | | || ||||||||||||||||||| ||| | ||||||||| ||||    
T  29373172 taattatgacttttatatgcgtttgacttgtatttttaagaca-attttcttttga-gagttccttaaacaatgtccttggaaaatttgttagcaaaact 29373269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 7613242 - 7613163
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtcctta 86  Q
    ||||||||| | ||||| ||||| ||||||| ||||||||||| | |||| ||  | |||| ||||||||||||||||||||    
T  7613242 tgtaattatgatttttacatatgattgacttatatttttaagacaaaatttct--ttatgagttccttaaacaatgtcctta 7613163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 49746638 - 49746688
Alignment:
Q  4 gtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 54  Q
    |||||||||||| |||||| |||||||||||| || |||||||||| ||||    
T  49746638 gtgtaattattatttttatttatgtttgacttatacttttaagataaaatt 49746688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 3432530 - 3432567
Alignment:
Q  70 cttaaacaatgtccttagaacacttgttagcataactg 107  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  3432530 cttaaagaatgttcttagaacacttgttagcataactg 3432567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4541352 - 4541396
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagata 49  Q
    ||||||||| ||||||| |||| ||||||||||||||| ||||||    
T  4541352 tgtaattataacttttacatatctttgacttgtattttcaagata 4541396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50888919 - 50888871
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagata 49  Q
    |||||||| |||| ||||||| || |||||||||||||||| |||||||    
T  50888919 attgtgtagttataacttttacatgtgtttgacttgtatttctaagata 50888871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 19509 - 19412
Alignment:
Q  2 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttag 99  Q
    |||||||||||||||||||| || |||||||||| | |||| |||||| |||| |||  | || | |||||||||||||||||||| |||||||||||    
T  19509 ttgtgtaattattacttttacatgtgtttgacttatgttttcaagataaaatttcttggagtggaatccttaaacaatgtccttaggacacttgttag 19412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 7723171 - 7723249
Alignment:
Q  26 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 104  Q
    |||||||||| ||||||||||||| |||| ||||| ||||||| |||||||||||   |||||| ||||||||||||||    
T  7723171 tgtttgacttatatttttaagataaaatttcttatgatgaatttcttaaacaatgcatttagaaaacttgttagcataa 7723249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 23803406 - 23803503
Alignment:
Q  7 taattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 104  Q
    ||||||||||||||| || |||||||||| || |||||||||| |||| ||||||||  ||||||| ||||||   |||| ||||||||||| |||||    
T  23803406 taattattacttttaaatgtgtttgacttataattttaagataaaatttcttataatagattccttgaacaatactcttaaaacacttgttaacataa 23803503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 46515536 - 46515459
Alignment:
Q  17 ttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacactt 94  Q
    |||||||| |||||||||||||||||||| |||  ||| ||| | |||| ||| ||||||||||||||||| ||||||    
T  46515536 ttttatatgtgtttgacttgtatttttaaaataatatttctttttatgagttctttaaacaatgtccttaggacactt 46515459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7712561 - 7712520
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttt 42  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  7712561 attgtgtaattatcacttttatatttgtttgacttgtatttt 7712520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 41141267 - 41141190
Alignment:
Q  17 ttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacactt 94  Q
    |||||||| ||||| ||||||||||| |||||| || | ||||| ||   |||||||||||||||| |||||||||||    
T  41141267 ttttatatgtgtttcacttgtattttcaagataaaactccttattataggttccttaaacaatgtcattagaacactt 41141190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 42161548 - 42161643
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagataca-attacttataatgaattccttaaacaatgtccttagaacacttgttagc 100  Q
    |||| |||| ||||| |||||||||||| |||||||||||||||| |  || ||| | || | |||||||||||||||| || ||||||||||||||    
T  42161548 tgtagttatgactttcatatatgtttgatttgtatttttaagataaatttttcttgt-ataagttccttaaacaatgtctttcgaacacttgttagc 42161643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 23466268 - 23466214
Alignment:
Q  25 atgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaat 79  Q
    ||||||||||| |||||| || |||||||| |||| |||| ||||||||||||||    
T  23466268 atgtttgacttatattttcaatatacaatttcttacaatggattccttaaacaat 23466214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24316335 - 24316294
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttt 42  Q
    ||||||||||||| ||||||||| || |||||||||||||||    
T  24316335 attgtgtaattataacttttatacatatttgacttgtatttt 24316294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 33878199 - 33878296
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 98  Q
    |||||||| |||| ||||||| |||||||||| ||||||||||| |||| | ||  || |  ||| |||||||||||||  || || |||||||||||    
T  33878199 attgtgtagttatgacttttacatatgtttgatttgtatttttaggataaattttttttttctgagttccttaaacaatacccctaaaacacttgtta 33878296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 10624997 - 10624925
Alignment:
Q  26 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 98  Q
    ||||||||||||||||| |||| | |||| ||| |  ||  ||| |||||||||| |||||||||||||||||    
T  10624997 tgtttgacttgtattttcaagacataatttctttttgtgggttctttaaacaatgcccttagaacacttgtta 10624925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 49112 - 49208
Alignment:
Q  9 attattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataac 105  Q
    ||||||||||||| || | |||||||| | |||||||||||  ||| ||||||||| ||||||||||||||| | ||||| |||||| ||| |||||    
T  49112 attattacttttacatgtatttgacttatgtttttaagataacatttcttataatggattccttaaacaatgcctttagagcacttgctagtataac 49208  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39180445 - 39180399
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaaga 47  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  39180445 attgtgtaattataacttttatatatgtttgacttgtattttcaaga 39180399  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 10803481 - 10803385
Alignment:
Q  2 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 98  Q
    ||||||||||||||||| |||| |||||||| || | |||| |||||| |||| || ||||| |||| |||||||||| | |||||  |||||||||    
T  10803481 ttgtgtaattattacttatatacatgtttgatttatgttttcaagataaaatttctcataataaatttcttaaacaatattcttaggtcacttgtta 10803385  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3135641 - 3135684
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtattttta 44  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  3135641 attgtgtagttatgacttttatatatgtttgacttgtattttta 3135684  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 12382651 - 12382582
Alignment:
Q  10 ttattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaat 79  Q
    |||| |||||||||||||||||||||||||||||| |||| | || ||||| ||   |||||||||||||    
T  12382651 ttatgacttttatatatgtttgacttgtatttttatgataaagtttcttattatatgttccttaaacaat 12382582  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 606732 - 606804
Alignment:
Q  10 ttattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtc 82  Q
    |||||||||| ||| || ||||| || ||||||| ||||| |||| ||| | |||||||||||||||||||||    
T  606732 ttattactttaataaatatttgatttatatttttgagatataatttctttttatgaattccttaaacaatgtc 606804  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 13138548 - 13138592
Alignment:
Q  5 tgtaattattacttttatatatgtttgacttgtatttttaagata 49  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  13138548 tgtaattatgacttttatatgtgtttgacttgtattttcaagata 13138592  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 10911082 - 10911165
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtcctta 86  Q
    ||||||||||||| ||||||||||||||||  |||||||||| |||||| | || ||| | |||  || |||||||||| ||||||    
T  10911082 attgtgtaattatgacttttatatatgttt--cttgtattttcaagataaactttctttttatgtgttacttaaacaatatcctta 10911165  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 28995855 - 28995945
Alignment:
Q  16 cttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataact 106  Q
    |||||| || |||||| ||| | ||||||||||| |||| ||| ||||| ||| |||||| |||||  |||  ||||||||||||||||||    
T  28995855 cttttacatgtgtttgccttatgtttttaagataaaatttcttttaatggatttcttaaataatgttattatgacacttgttagcataact 28995945  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 1088272 - 1088352
Alignment:
Q  21 atatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagca 101  Q
    |||||||||| |||| ||||||||||||| |||| ||| |  ||  ||||||||||||||  |||||| || |||||||||    
T  1088272 atatatgtttaacttatatttttaagatataatttctttttgtgggttccttaaacaatgcacttagagcatttgttagca 1088352  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 8713833 - 8713769
Alignment:
Q  23 atatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttag 87  Q
    |||||||||||||||||||| |||| | ||||  || ||||| ||| |||||||||| |||||||    
T  8713833 atatgtttgacttgtattttcaagacaaaattttttttaatggatttcttaaacaatatccttag 8713769  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 10106950 - 10107026
Alignment:
Q  3 tgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaat 79  Q
    |||||| |||| ||||||| |||| |||| |||||||||| |||||| |||| ||| ||||   |||||||||||||    
T  10106950 tgtgtagttatgacttttacatatctttggcttgtattttcaagataaaatttcttttaatagcttccttaaacaat 10107026  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6471236 - 6471195
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttt 42  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  6471236 attgtataattattacttttatatatgtttgacttgtatttt 6471195  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 32967753 - 32967694
Alignment:
Q  27 gtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtcctta 86  Q
    |||||||||||||||| |||||| |||| ||  | |||||||||||||||||||||||||    
T  32967753 gtttgacttgtattttgaagataaaatttctctttatgaattccttaaacaatgtcctta 32967694  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 27134581 - 27134682
Alignment:
Q  1 attgtgtaattattacttttatatatgtttga-cttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttag 99  Q
    |||||||| |||| ||||||| || ||||| | |||||| |||||||||| |||| ||| |  | | |||||||||||||||| |||| |||||||||||    
T  27134581 attgtgtagttataacttttaaatgtgttttaacttgtacttttaagataaaatttctttttgtaagttccttaaacaatgtctttaggacacttgttag 27134680  T
Q  100 ca 101  Q
    ||    
T  27134681 ca 27134682  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 34086616 - 34086547
Alignment:
Q  37 tatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataact 106  Q
    |||||| |||||  |||| ||||||||||||||||||||||||    ||||| ||||| |||||||||||    
T  34086616 tattttcaagatcaaatttcttataatgaattccttaaacaatccatttagagcacttattagcataact 34086547  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41909258 - 41909205
Alignment:
Q  1 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 54  Q
    ||||| || |||| ||||||| |||||||| |||||||||||||||||| ||||    
T  41909258 attgtatagttatgacttttagatatgtttaacttgtatttttaagatagaatt 41909205  T

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Target: scaffold0129 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 25852 - 25946
Alignment:
Q  10 ttattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 104  Q
    |||||| |||||||| |||||||||| | ||||||||||| ||  | |||||||| |||||||||||||| || |||  ||| ||||||| ||||    
T  25852 ttattatttttatatttgtttgacttatgtttttaagataaaaaaaattataatggattccttaaacaatatcattaagacatttgttagtataa 25946  T

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