View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_high_4 (Length: 419)
Name: NF17870_high_4
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 12121375 - 12121759
Alignment:
| Q |
11 |
atcatcacacatcaaaggtaaaatacataacagctactaacaagtatagatccaaactaaaataaccacatttaggca----tactttctagtaaatcca |
106 |
Q |
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| T |
12121375 |
atcatcacacatcaaaggtaaaatagataacagctactaacaagtatagatccaaagtaa-----ccacgtttaaccaaacatactttctagtaa-tcca |
12121468 |
T |
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| Q |
107 |
aattgaaatcaaagcatcatttgaaactctgtaaacagtctcaaaagaccttacaaagtagtcgtcttattagtcaaagaacaagaaaaataaagctttg |
206 |
Q |
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| T |
12121469 |
aattgaaattaaaacatcctttgaaactctgtaaacagtca-aaaagaccttacaaagtagtcatcttattagtcaaagaacatgaaaaataaagctttg |
12121567 |
T |
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| Q |
207 |
tttaactcatcagcatcaaatttgagctaactgcaacataaaccaaatctatttatctatccatctatctgcttaaag--aaatcttccgctaatataca |
304 |
Q |
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| T |
12121568 |
tttaactcatcagcatcaaatttgagctaattgcaacattaaccatatctatttatctatccatctatctgcttaaagaaaaatcttccgctaatataca |
12121667 |
T |
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| Q |
305 |
tcgcggaactttacacttacatttcctgtcatttgttccctacatcagtgcaatctttcacgagatctttaccagtgataatcactctttct |
396 |
Q |
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| T |
12121668 |
tcgcggaattttacacttacatttcctgtcatttgttccctacatcagtgcaatctttcacgagagctttaccagtgataatcactctttct |
12121759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 14670180 - 14670021
Alignment:
| Q |
110 |
tgaaatcaaagcatcatttgaaactctgtaaa-cagtctcaaaagaccttacaaagt-agtcgtcttattagtcaaagaacaagaaaaataaagctttgt |
207 |
Q |
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| T |
14670180 |
tgaaattaaagcatcatttgaaacaatgcaaaacagtgtcgaaagaccttataaaatcaatcaacttataagtcaaataacatgaaaaataaagctttgt |
14670081 |
T |
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| Q |
208 |
ttaactcatcagcatcaaatttgagctaactgcaacataaaccaaatctatttatctatc |
267 |
Q |
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| T |
14670080 |
ttaagtcaacaaaatcaaacttgagctgattgcaacatataccgaatatatctatctatc |
14670021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 14643107 - 14643252
Alignment:
| Q |
101 |
aatccaaa-ttgaaatcaaagcatcatttgaaactctgtaaa-cagtctcaaaagaccttacaaagt-agtcgtcttattagtcaaagaacaagaaaaat |
197 |
Q |
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| T |
14643107 |
aatccaaacttgaaattaaagcatcatttgaaacaatgcaaaacagtgtcgaaagaccttacaaaatcagtcaacttataagtcaaataacatgaaaaat |
14643206 |
T |
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| Q |
198 |
aaagctttgtttaactcatcagcatcaaatttgagctaactgcaac |
243 |
Q |
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| T |
14643207 |
aaagcttcgttcaagtcaacaaaatcaaacttgagctgattgcaac |
14643252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 14691093 - 14691146
Alignment:
| Q |
106 |
aaattgaaatcaaagcatcatttgaaactctgtaaacagtctcaaaagacctta |
159 |
Q |
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| T |
14691093 |
aaattgaaattaaagcatcatctgaaactctgtaaaacttttcaaaagacctta |
14691146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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