View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_high_5 (Length: 399)
Name: NF17870_high_5
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 30009062 - 30008673
Alignment:
| Q |
1 |
ctcacattttgggtcagtgaagaagtgctcccagaatcagttccagttgatttaattgaaagttgtctgcttttggaatttccatgagcacccttttgca |
100 |
Q |
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| T |
30009062 |
ctcacattttgggtcagtgaagaagtgctcccagaatcagttccagttgatttaattgaaagttgtctgcttttggaatttccatgagcacccttttgca |
30008963 |
T |
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| Q |
101 |
agaaactggaattgagccttgtaagagttgttgggctacacataatggagctttttctaatgcaagggagagaaagatgggttgactttgcagaaagggt |
200 |
Q |
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| T |
30008962 |
agaaactggaattgagccttgtaagagttgttgggctacacataatggagctttttctaatgcaagggagagaaagaggggttgactttgcagaaagggt |
30008863 |
T |
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| Q |
201 |
ggcatgaaagagtgatggtggttttagagagtggttggtgagaactgaagaaaatggagttgtgaggaaatgggtcgccattgaaggtgccaaaagggta |
300 |
Q |
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| T |
30008862 |
ggcatgaaagagtgatggtggttttagagagtggttggtgagaactgaagaaaatggagttgtgaggaaatgggtcgccattgaaggtgccaaaagggta |
30008763 |
T |
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| Q |
301 |
agtttcgaaggtttcaagagaaggcattcatacaagtaatgtgggacctgaaagagaaatttgtatggacaagaagaacaagtgatgatg |
390 |
Q |
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| T |
30008762 |
agtttcaaaggtttcaagagaaggcattcatacaagtaatgtgggacctgaaagagaaatttgtatggacaagaagaacaagtgatgatg |
30008673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 30010079 - 30009895
Alignment:
| Q |
1 |
ctcacattttgggtcagtgaagaagtgctcccagaatcagttccagttgatttaattgaaagttgtctgcttttggaatttccatgagcacccttttgca |
100 |
Q |
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|||||||| || || |||||||||||| |||||||||||||| ||| ||||||| | |||| ||| ||||||| |||||| | |||| |||||| |||| |
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| T |
30010079 |
ctcacattatgagtgagtgaagaagtgttcccagaatcagtttcagctgatttaggtaaaagctgtttgctttttgaattttcttgagaacccttgtgca |
30009980 |
T |
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| Q |
101 |
agaaactggaattgagccttgtaagagttgttgggctacacataatggagctttttctaatgcaagggagagaaagatgggttga |
185 |
Q |
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||||||||||||||||| | ||| |||||||| || |||||| |||||| | |||| || ||||||||||||||| ||||||| |
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| T |
30009979 |
agaaactggaattgagcatagtaggagttgttaggttacacaaaatggaacgtttttggatacaagggagagaaagaggggttga |
30009895 |
T |
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