View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17870_high_7 (Length: 227)
Name: NF17870_high_7
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 580563 - 580342
Alignment:
| Q |
1 |
ctccgtgtttctccatcaagttcttttgctcctcctccacagcagaaaggtactgtttgttacacagaagatatgctccggtccaagtggaggtgattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580563 |
ctccgtgtttctccatcaagttcttttgctcctcctccacagcagaaaggtactgtttgttacacagaagatatgctccggtccaagtggaggtgattga |
580464 |
T |
|
| Q |
101 |
actggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580463 |
actggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcac |
580364 |
T |
|
| Q |
201 |
tgcagcatgtcttcctatgatt |
222 |
Q |
| |
|
||||||||||| |||| ||||| |
|
|
| T |
580363 |
tgcagcatgtcgtcctctgatt |
580342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 591864 - 592074
Alignment:
| Q |
1 |
ctccgtgtttctccatcaagttcttttgctcctcctccacagcagaaaggtactgtttgttacacagaagatatgctccggtccaagtggaggtgattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
591864 |
ctccgtgtttctccatcaagttcttttgctcctcctccacagcagaaaggtactgtttgttacacagaagatatgctccggtccaagtggaggtgattga |
591963 |
T |
|
| Q |
101 |
actggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
591964 |
actggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcac |
592063 |
T |
|
| Q |
201 |
tgcagcatgtc |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
592064 |
tgcagcatgtc |
592074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 37434232 - 37434150
Alignment:
| Q |
119 |
gaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcact |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
37434232 |
gaaaagagcggcaatgaggagtcctgtgacttcagcttcggttgtaaggcggttgtctttgtattttgagtcaatgaagcact |
37434150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 37434333 - 37434230
Alignment:
| Q |
4 |
cgtgtttctccatcaagttcttttgctcctc------ctccacagcagaaaggtactgtttgttacacagaagatatgctccggtccaagtggaggtgat |
97 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| || |||||||||| || | ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
37434333 |
cgtgtttctccatcaagttcttctgctcctcctcctcctccacaacataaaggtactgcttataacacatgagatatgctctggtccaagtggaggtgat |
37434234 |
T |
|
| Q |
98 |
tgaa |
101 |
Q |
| |
|
|||| |
|
|
| T |
37434233 |
tgaa |
37434230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University