View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_11 (Length: 367)
Name: NF17870_low_11
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 42292712 - 42292882
Alignment:
| Q |
1 |
aactccttgggtagtggtgttggttcatgctccttggtataattctaatcaagctcatcagggtgaggctgaatctgttgacatgaagactgcaatggaa |
100 |
Q |
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| T |
42292712 |
aactccttgggtagtggtgttggttcatgctccttggtataattctaatcaagctcatcagggtgaggctgaatctgttgacatgaagactgcaatggaa |
42292811 |
T |
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| Q |
101 |
ggtttgctctataatgcacttgttgatgtcgtttttacagggcatgttcatgcctacgaacgctttgtaag |
171 |
Q |
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| T |
42292812 |
ggtttgctctataatgcacttgttgatgtcgtttttacagggcatgttcatgcatacgaacgctttgtaag |
42292882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 42292911 - 42292943
Alignment:
| Q |
258 |
tctagttgaagtactggttcaatcgggttgaaa |
290 |
Q |
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| T |
42292911 |
tctagttgaagtgctggttcaatcgggttgaaa |
42292943 |
T |
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