View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_13 (Length: 306)
Name: NF17870_low_13
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 7659618 - 7659344
Alignment:
| Q |
18 |
caaagggccatgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggt |
117 |
Q |
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| T |
7659618 |
caaagggccatgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggt |
7659519 |
T |
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| Q |
118 |
ggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatgg |
217 |
Q |
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| T |
7659518 |
ggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatgg |
7659419 |
T |
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| Q |
218 |
ttaattaatttgtgttatattgtggctatggttatgaaatatatttgatgatgataatatttttgatgttgttgt |
292 |
Q |
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| T |
7659418 |
ttaactattttgtgtactgttgtggctatgattatgaaatatatttgatgatgataatatttttgatgttgttgt |
7659344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 7624068 - 7624305
Alignment:
| Q |
19 |
aaagggccatgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtg |
118 |
Q |
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| T |
7624068 |
aaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtg |
7624167 |
T |
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| Q |
119 |
gaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatggt |
218 |
Q |
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| T |
7624168 |
gaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccatagagacatggt |
7624267 |
T |
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| Q |
219 |
taattaatttgtgttatat-tgtggctatggttatgaaatat |
259 |
Q |
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| T |
7624268 |
taatttat----gttatgtatgtggctatggttatgaaatat |
7624305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 216
Target Start/End: Complemental strand, 7675226 - 7675047
Alignment:
| Q |
37 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
136 |
Q |
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| T |
7675226 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
7675127 |
T |
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| Q |
137 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatg |
216 |
Q |
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| T |
7675126 |
ttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
7675047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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