View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17870_low_14 (Length: 281)

Name: NF17870_low_14
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17870_low_14
NF17870_low_14
[»] chr2 (4 HSPs)
chr2 (14-269)||(22835337-22835589)
chr2 (24-275)||(18853697-18853948)
chr2 (22-113)||(12398650-12398741)
chr2 (232-281)||(21849757-21849806)
[»] chr5 (3 HSPs)
chr5 (14-281)||(21346411-21346678)
chr5 (14-163)||(25801496-25801645)
chr5 (169-281)||(25801253-25801365)
[»] chr7 (2 HSPs)
chr7 (14-281)||(6671914-6672181)
chr7 (43-170)||(7812246-7812373)
[»] chr3 (1 HSPs)
chr3 (14-281)||(3573151-3573422)
[»] scaffold0073 (2 HSPs)
scaffold0073 (14-243)||(41826-42055)
scaffold0073 (238-273)||(49929-49964)
[»] chr8 (2 HSPs)
chr8 (21-278)||(15747586-15747842)
chr8 (24-106)||(25819138-25819220)
[»] chr1 (3 HSPs)
chr1 (14-104)||(160334-160424)
chr1 (98-201)||(27175755-27175858)
chr1 (243-275)||(160418-160450)
[»] chr6 (1 HSPs)
chr6 (98-201)||(23834377-23834480)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 22835337 - 22835589
Alignment:
Q  14 agaccgtgcgcatatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctg 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22835337 agaccgtgcgcatatccatctctgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttttg 22835436  T
Q  114 tagtttccactgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaaattcgtccctttttca 213  Q
    |   ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||| |    
T  22835437 t---ttcgactgaatttctttggtcgcataagacttgtcgcctttgttcaaaacaagcctacctcgcaaattaatcttacaaaaatccattcctttttta 22835533  T
Q  214 taaatatcttccgtaatcttgatgctaactctttcacctcgaatcaaaggttgagg 269  Q
    |||||||| |  |||||||||||||  ||| |||||||||||||||| ||||||||    
T  22835534 taaatatcctgtgtaatcttgatgccgactgtttcacctcgaatcaatggttgagg 22835589  T

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Target: chr2; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 18853948 - 18853697
Alignment:
Q  24 catatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctgtagtttccac 123  Q
    |||||||||||  |||||||||||||| | ||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||||| || |||||| ||    
T  18853948 catatccatctatgttgcaaagaaaaattaatagtaccctcttcctaaagacatcatactccatgctcctgttgtcttccaaagtttttggagtttcgac 18853849  T
Q  124 tgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaaattcgtccctttttcataaatatctt 223  Q
    ||||||||||| |||||||||||||| || |||||||| | ||||||||||||||||||||| |||||||||| |  | | ||||||||||| ||||| |    
T  18853848 tgaatttctttagtcgcataaggcttatcacctttgtttagaacaagcctacctcgcaaatttgtcttacaaatagccattcctttttcatagatatcct 18853749  T
Q  224 ccgtaatcttgatgctaactctttcacctcgaatcaaaggttgaggtaaatt 275  Q
      ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18853748 gtgtaatcttgctgctaactctttcacctcgaatcaaaggttgaggtaaatt 18853697  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 12398650 - 12398741
Alignment:
Q  22 cgcatatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctg 113  Q
    |||||||||||||| |  ||||||||||| |||||| |||||||||||||||||| |||  |||| || |||| ||||||||| || |||||    
T  12398650 cgcatatccatctctgaagcaaagaaaaattcataaaaccctcttcctaaagacatcatgcgccaggcacctgctgtcttccatagcttctg 12398741  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 21849806 - 21849757
Alignment:
Q  232 ttgatgctaactctttcacctcgaatcaaaggttgaggtaaattatcgtt 281  Q
    ||||||||||||  ||| |||||||||||||||||||||||||| |||||    
T  21849806 ttgatgctaacttgttcccctcgaatcaaaggttgaggtaaattgtcgtt 21849757  T

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Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 21346411 - 21346678
Alignment:
Q  14 agaccgtgcgcatatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctg 113  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||    
T  21346411 agaccatgcgcatatccatctctgttgcaaagaaaaattcatagtaccctcttcctaaagacatcattttccatgctcctgttgtcttccaaagtttttg 21346510  T
Q  114 tagtttccactgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaaattcgtccctttttca 213  Q
     |||||| |||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||  | || | |||||||||    
T  21346511 gagtttcgactggatttctttggttgcaaaaggcttatcgcctttgttcaaaacaagcctacctcgcaaatttgtcttacaagcagtcattcctttttca 21346610  T
Q  214 taaatatcttccgtaatcttgatgctaactctttcacctcgaatcaaaggttgaggtaaattatcgtt 281  Q
    || ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  21346611 tagatatcctgcgtaatcttgatgctaactctttcacctcgaatcaaaggttgagataaattgtcgtt 21346678  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 25801645 - 25801496
Alignment:
Q  14 agaccgtgcgcatatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctg 113  Q
    |||||||||||||||||||||  |||||||||||||| ||||  |||||||||||||||||   ||||  ||||||||||||||||||||||||||| ||    
T  25801645 agaccgtgcgcatatccatctttgttgcaaagaaaaattcattgtaccctcttcctaaagaagtcatactccatgctcctgttgtcttccaaagtttttg 25801546  T
Q  114 tagtttccactgaatttctttggtcgcataaggcttgtcgcctttgttca 163  Q
     |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  25801545 gagtttcgactgaatttctttggtcgcataaggcttatcgcctttgttca 25801496  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 25801365 - 25801253
Alignment:
Q  169 agcctacctcgcaaattagtcttacaaaaattcgtccctttttcataaatatcttccgtaatcttgatgctaactctttcacctcgaatcaaaggttgag 268  Q
    ||||||||||||||||| ||||||||||||  | | ||||||||||| ||||  |  |||||||||||||||||||||||||||||||||||||||||||    
T  25801365 agcctacctcgcaaatttgtcttacaaaaagccattcctttttcatagatattatgtgtaatcttgatgctaactctttcacctcgaatcaaaggttgag 25801266  T
Q  269 gtaaattatcgtt 281  Q
    ||||||| |||||    
T  25801265 gtaaattgtcgtt 25801253  T

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Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 6671914 - 6672181
Alignment:
Q  14 agaccgtgcgcatatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctg 113  Q
    ||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||   ||||  ||||||| ||||||||||||||||||| ||    
T  6671914 agaccgtgcacatatccatctctgttgcaaagaaaaattcatagtaccctcttcctaaagaagtcatactccatgcttctgttgtcttccaaagtttttg 6672013  T
Q  114 tagtttccactgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaaattcgtccctttttca 213  Q
     |||||| |||||||||||||| ||||||||||||| ||| ||||||||| ||| ||||||||||||||||| ||||||||||||  | | |||||||||    
T  6672014 gagtttcgactgaatttctttgatcgcataaggcttatcgtctttgttcagaaccagcctacctcgcaaatttgtcttacaaaaagccattcctttttca 6672113  T
Q  214 taaatatcttccgtaatcttgatgctaactctttcacctcgaatcaaaggttgaggtaaattatcgtt 281  Q
    || ||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6672114 tagatattatgtgtaatcttgatgctaactctttcacctcgaatcaaaggttgaggtaaattgtcgtt 6672181  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 7812246 - 7812373
Alignment:
Q  43 aagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctgtagtttccactgaatttctttggtcgcat 142  Q
    |||||||| |||||||| ||||||||||| ||| ||||   ||||| ||||||||||||||| | ||| ||||||||| ||||||| || ||||| | ||    
T  7812246 aagaaaaattcataatatcctcttcctaacgactacatgctccatgttcctgttgtcttccatattttgtgtagtttcaactgaatgtccttggttgaat 7812345  T
Q  143 aaggcttgtcgcctttgttcaaaacaag 170  Q
    ||||||||||| | || |||||||||||    
T  7812346 aaggcttgtcgtccttattcaaaacaag 7812373  T

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Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 3573151 - 3573422
Alignment:
Q  14 agaccgtgcgcatatccatctccgttgcaaagaaa----aactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtt 109  Q
    ||||||||||||||||||||||  |||||||||||    || ||||| ||||||||||||||||||  ||||  |||||||||||||||||||||| |||    
T  3573151 agaccgtgcgcatatccatctctattgcaaagaaagaaaaattcatagtaccctcttcctaaagacgtcatactccatgctcctgttgtcttccaatgtt 3573250  T
Q  110 tctgtagtttccactgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaaattcgtcccttt 209  Q
    | || |||||  |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||| || | |||||    
T  3573251 tttggagttttgactgaatttctttggtcgcataaggcttatcgcctttgttcagaactagcctacctcgcaaatttgtcttacaaaaagtcattccttt 3573350  T
Q  210 ttcataaatatcttccgtaatcttgatgctaactctttcacctcgaatcaaaggttgaggtaaattatcgtt 281  Q
    |||||| ||||  | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3573351 ttcatagatattctgcttaatcttgatgctaactctttcacctcgaatcaaaggttgaggtaaattgtcgtt 3573422  T

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Target: scaffold0073 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 41826 - 42055
Alignment:
Q  14 agaccgtgcgcatatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctg 113  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||   ||||  ||||||||||||||||||||||||||| ||    
T  41826 agaccgtgcgcatatccatctctgttgcaaagaaaaattcatagtaccctcttcctaaagaagtcatactccatgctcctgttgtcttccaaagtttttg 41925  T
Q  114 tagtttccactgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaaattcgtccctttttca 213  Q
     |||||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||  | | |||||||||    
T  41926 gagtttcgactgaatttctttggtcgcataaggcttatcgcctttgttcaaaaccagtctacctcgcaaatttgtcttacaaaaagccattcctttttca 42025  T
Q  214 taaatatcttccgtaatcttgatgctaact 243  Q
    || ||||  |  ||||||||||||||||||    
T  42026 tagatattatgtgtaatcttgatgctaact 42055  T

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Target: scaffold0073; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 49929 - 49964
Alignment:
Q  238 ctaactctttcacctcgaatcaaaggttgaggtaaa 273  Q
    ||||||||||||||||||||||||||||||||||||    
T  49929 ctaactctttcacctcgaatcaaaggttgaggtaaa 49964  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 15747586 - 15747842
Alignment:
Q  21 gcgcatatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaagtttctgtagtttc 120  Q
    |||||||||||| ||  | ||||||||||| ||||| ||||| ||||||| ||| | |||||||||||| | |  |||||||||||| ||||||| |||     
T  15747586 gcgcatatccatttcgttggcaaagaaaaaatcatagtacccccttcctagagaaagcatatgccatgcac-tcctgtcttccaaagcttctgtaatttt 15747684  T
Q  121 cactgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaaattcgtccctttttcataaatat 220  Q
     | | |||||| || || | ||| |||||||| ||||||||||||||||| || || |||||||||| ||| |||||||||   ||   || |||||  |    
T  15747685 gattcaatttcctttgtagaatagggcttgtctcctttgttcaaaacaagtcttccccgcaaattagacttgcaaaaattcaatccacgttaataaaagt 15747784  T
Q  221 cttccgtaatcttgatgctaactctttcacctcgaatcaaaggttgaggtaaattatc 278  Q
    | |  |||||||| || || |||||||| ||||||||| | |||||||| ||||||||    
T  15747785 cctgagtaatcttaatactgactctttctcctcgaatcgacggttgaggaaaattatc 15747842  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 25819220 - 25819138
Alignment:
Q  24 catatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttccaaa 106  Q
    |||||||||||| |  |||||||||||||| ||| |||||||||||||||||| |||  |||| || |||| |||||||||||    
T  25819220 catatccatctctgaagcaaagaaaaactcgtaaaaccctcttcctaaagacatcatgcgccaggcacctgctgtcttccaaa 25819138  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 160334 - 160424
Alignment:
Q  14 agaccgtgcgcatatccatctccgttgcaaagaaaaactcataataccctcttcctaaagacaacatatgccatgctcctgttgtcttcca 104  Q
    ||||| ||| ||||||||| |  |||||||||||||| ||||| ||||||||||||||||||| ||| | |||||||| ||||||||||||    
T  160334 agaccatgcacatatccatatttgttgcaaagaaaaattcatagtaccctcttcctaaagacatcattttccatgctcatgttgtcttcca 160424  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 27175858 - 27175755
Alignment:
Q  98 tcttccaaagtttctgtagtttccactgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaa 197  Q
    |||||||||| |||||||||||  ||| ||| || || || | |||||| ||||| || || |||||||||||||  || |||||||||||||| |||||    
T  27175858 tcttccaaagcttctgtagttttgactcaatgtcctttgtagtataaggtttgtctcccttcttcaaaacaagccgtccccgcaaattagtcttgcaaaa 27175759  T
Q  198 attc 201  Q
    ||||    
T  27175758 attc 27175755  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 160418 - 160450
Alignment:
Q  243 tctttcacctcgaatcaaaggttgaggtaaatt 275  Q
    |||| ||||||||||||||||||||||||||||    
T  160418 tcttccacctcgaatcaaaggttgaggtaaatt 160450  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 23834377 - 23834480
Alignment:
Q  98 tcttccaaagtttctgtagtttccactgaatttctttggtcgcataaggcttgtcgcctttgttcaaaacaagcctacctcgcaaattagtcttacaaaa 197  Q
    |||||||||| |||||||||||  ||| ||| || || || | |||||| ||||| || || ||||||||||| |  || |||||||||||||| |||||    
T  23834377 tcttccaaagcttctgtagttttgactcaatgtcctttgtagtataaggtttgtctcccttcttcaaaacaagtcgtccccgcaaattagtcttgcaaaa 23834476  T
Q  198 attc 201  Q
    ||||    
T  23834477 attc 23834480  T

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