View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_15 (Length: 277)
Name: NF17870_low_15
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 47170521 - 47170761
Alignment:
| Q |
19 |
gattttagggttatttttgtgataggtgagaaagttagaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaa |
118 |
Q |
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| T |
47170521 |
gattttagggttatttttgtgataggtgagaaagttagaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaa |
47170620 |
T |
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| Q |
119 |
atggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatgg |
218 |
Q |
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| T |
47170621 |
atggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatgg |
47170720 |
T |
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| Q |
219 |
agaaatcccctcattcctacctcgcctacaccggtgcagaa |
259 |
Q |
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| T |
47170721 |
aaaaatcccctcattcctacctcgcctacaccggtgcagaa |
47170761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 42163781 - 42163612
Alignment:
| Q |
71 |
ttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctg |
170 |
Q |
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| T |
42163781 |
ttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcataatggatggtacaaagagaagatgtggtgctgtatctg |
42163682 |
T |
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| Q |
171 |
gtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggagaaatcccctcattcctacct |
240 |
Q |
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| T |
42163681 |
gtgttaccaccgtgaaaaaccctgtctcacttgctcgccttgtcatggaaaagtcccctcattcatacct |
42163612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 5480762 - 5480581
Alignment:
| Q |
56 |
gaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagat |
155 |
Q |
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| T |
5480762 |
gaaacggatccactattcaattcgggtcgtggatctgccctgacggaaaaaggaacggtggaaatggaggctagcataatggatggaccaaaaagacgat |
5480663 |
T |
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| Q |
156 |
gtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggagaaatcccctcattccta |
237 |
Q |
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| T |
5480662 |
gcggtgccgtttcaggtttaaccacggtaaaaaatccaatttcactggctcgtttagtcatggataaatctcctcattccta |
5480581 |
T |
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