View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_17 (Length: 216)
Name: NF17870_low_17
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_17 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7659810 - 7659595
Alignment:
| Q |
1 |
gatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
100 |
Q |
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| T |
7659810 |
gatttttcggagcattcgccaccgcggaccataaggtgcaaacacaaggtcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
7659711 |
T |
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| Q |
101 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
200 |
Q |
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| T |
7659710 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagccagaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
7659611 |
T |
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| Q |
201 |
catgaatttttgccaa |
216 |
Q |
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|||||||||||||||| |
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| T |
7659610 |
catgaatttttgccaa |
7659595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 7623875 - 7624090
Alignment:
| Q |
1 |
gatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
100 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623875 |
gatttttcggagcattcgccacctcggaccataaggggcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
7623974 |
T |
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| Q |
101 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
200 |
Q |
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| T |
7623975 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcattaaagggc |
7624074 |
T |
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| Q |
201 |
catgaatttttgccaa |
216 |
Q |
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|||| ||||||||||| |
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| T |
7624075 |
catggatttttgccaa |
7624090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 7675437 - 7675235
Alignment:
| Q |
1 |
gatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
100 |
Q |
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|||||||| ||| | |||||||| ||||||||||| |||||||||| |||||||| |||||| |||| || |||||||||| ||||||||||||||| |
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| T |
7675437 |
gatttttctgagtagtcgccaccttggaccataaggaccaaacacaaggtcttgataattataacctatgtacttagctccggcattgggtggccggcta |
7675338 |
T |
|
| Q |
101 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
200 |
Q |
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||||||||||||||||| ||||||||||||||||| || |||||| | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |
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| T |
7675337 |
ctaaagttagcatcatgtacctttaagaattgttccgccacggaggccgaagccgccacgatcacatccaccgagcctaatttgaggtgcatcaaagggc |
7675238 |
T |
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| Q |
201 |
cat |
203 |
Q |
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||| |
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| T |
7675237 |
cat |
7675235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 45477762 - 45477623
Alignment:
| Q |
17 |
cgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcat |
116 |
Q |
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|||||||| || |||||||| ||||| |||||||||||||| ||||| |||| ||||| || |||| ||| | |||||||||| ||| || | ||||| |
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| T |
45477762 |
cgccaccgtggtccataaggagcaaaaacaagatcttgataattatatgctaagtatttggcgccggagttagttggccggctagaaaaattggtatcat |
45477663 |
T |
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| Q |
117 |
gaacctttaagaattgttcggcaacggagcctgaagccgc |
156 |
Q |
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|||| |||||||||||||| || || ||| | |||||||| |
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| T |
45477662 |
gaacttttaagaattgttcagcgaccgaggcggaagccgc |
45477623 |
T |
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