View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_2 (Length: 553)
Name: NF17870_low_2
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 238 - 534
Target Start/End: Original strand, 4196698 - 4196997
Alignment:
| Q |
238 |
agttccttatgtggccatggatatttctacaatataacaatttgtgttatgcctgaaaatccattgtcttttggagcaaagaataagtaatgtatgttaa |
337 |
Q |
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| T |
4196698 |
agttccttatgtggccatggatatttctacaacataacaatttgtgttatgcctgaaaattcattgtcttttggagcaaagaataagtactgtatgttaa |
4196797 |
T |
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| Q |
338 |
attggaatcaaattttagtaattggtataagcaaatggctgctgattgttaagtttcttagatgaatgaatgcttagatatcctgtttctagacagaaaa |
437 |
Q |
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| T |
4196798 |
attggaatcaaattttagtaattggtataagcaaatggctgctgattgttaagtttcttagatgaatgaatgcttagatatcctgtttctagacagaaaa |
4196897 |
T |
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| Q |
438 |
cagacaacgcttgtataattggaacttatatgatgtgggaaactaaga---nnnnnnnnnncttctattgaaatctactaaagaaatttcacatcttttc |
534 |
Q |
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| T |
4196898 |
cagacaacgcttgtataattggaacttatatgatgtgggaaactaagattttttttttttttttctattgaaatctactaaagaaatttcacatcttttc |
4196997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 4196478 - 4196626
Alignment:
| Q |
18 |
aatactcatggatgaatgttccaattgagtgaagcttcgtaagaataataactgttttgcaaattgcttagatgcttagattcgattgctaattgtctta |
117 |
Q |
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| T |
4196478 |
aatactcatggatgaatgttccaattgagtgaagcttcgtaagaataataactgttttgcaaattgcttagatgcttagattcgattgctaattgtctta |
4196577 |
T |
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| Q |
118 |
gctgtttgcatgctgttgatactgataagaaaagaactattgatacttg |
166 |
Q |
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| T |
4196578 |
gctgtttgcatgctgttgatactgataagaaaagaactattgatacttg |
4196626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 4187866 - 4187917
Alignment:
| Q |
240 |
ttccttatgtggccatggatatttctacaatataacaatttgtgttatgcct |
291 |
Q |
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| T |
4187866 |
ttccttatgcggcaatggatatttgtactacataacaatttgtgttatgcct |
4187917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 534
Target Start/End: Original strand, 4188218 - 4188250
Alignment:
| Q |
502 |
ttgaaatctactaaagaaatttcacatcttttc |
534 |
Q |
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| T |
4188218 |
ttgaaatctactaaagaaaattcacatcttttc |
4188250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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