View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_3 (Length: 550)
Name: NF17870_low_3
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 534
Target Start/End: Original strand, 32086111 - 32086632
Alignment:
| Q |
13 |
cagagagaatgggtatgtcaagggaggctaacttgtggagaatgtcatcaattagggaggtcgggagagtttggatttcaacaagggtaaattgatcagt |
112 |
Q |
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| T |
32086111 |
cagagagagtgggtatgtcaagggaggctaacttgtggagaatgtcatcaattagggaggccgggagagtttggatttcaacaagggtaaattgatcagt |
32086210 |
T |
|
| Q |
113 |
aatgagtttgctaatggcttcttccattttatcggctgtggctttcgaacaggtagtttttggattagcccgatgaaaacaccaaagtgttaggaactgg |
212 |
Q |
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| T |
32086211 |
aatgagtttgctaatggcttcttccattttatcggctgtggctttcgaacatgtagtttttggattagcccgatgaaaacaccaaagtgttaggaactgg |
32086310 |
T |
|
| Q |
213 |
gtaaatttgcaatagttcaaggactagcaacctcctaagaaggaaaaagataatgaaatttagattctttcttgatttcaaaatgctggaattacttcaa |
312 |
Q |
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| T |
32086311 |
gtaaatttgcaatagttcaaggactagcaacctcctaagaaggaaaaagataatgaaatttagattctttcttgatttcaaaatgctggaattacttcaa |
32086410 |
T |
|
| Q |
313 |
ttaatcaggaaatacatactactatatttgcagtaacaaaattcaagtaactaagataagaatctaacaatccannnnnnngtatcaggcgttgatagct |
412 |
Q |
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| T |
32086411 |
ttaatcagaaaatacatactactatatttgccgtaacaaaattcaaataactaagataagaatctaacaatccatttttttgtatcaggcattgatagct |
32086510 |
T |
|
| Q |
413 |
aatagaattggttattcactatctgatgcaaccttctcgatatacttcaatggtatggctcttccataggtgacatggcataatctcccaagtacgttag |
512 |
Q |
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| T |
32086511 |
aatataattggttattcactatctgatgcaaccttctcgatatacttcaatggtatggctcttccatagatgacatggcataatctcccaagtaccttag |
32086610 |
T |
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| Q |
513 |
agtcaggatctttcttttgggt |
534 |
Q |
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| T |
32086611 |
actcaggatctttcttttgggt |
32086632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 32084647 - 32084948
Alignment:
| Q |
14 |
agagagaatgggtatgtcaagggaggctaacttgtggagaatgtcatcaattagggaggtcgggagagtttggatttcaacaagggtaaattgatcagta |
113 |
Q |
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|||| |||||||||| |||||||| ||||| |||||||||||||| |||||| ||||| || ||||||||| ||||| ||||||| |||||| ||| |
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| T |
32084647 |
agagggaatgggtatttcaagggacgctaatttgtggagaatgtcgtcaattttggaggccgtaagagtttgggtttcaccaagggtggattgattggta |
32084746 |
T |
|
| Q |
114 |
atgagtttgctaatggcttcttccattttatcggctgtggctttcgaacaggtagtttttggattagcccgatgaaaacaccaaagtgttaggaactggg |
213 |
Q |
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|||||||||||||||||||||||||||||| || |||| ||| |||| ||||||| ||||||| ||||||||| |||||||| |||||||||| | |
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| T |
32084747 |
gtgagtttgctaatggcttcttccattttattagcggtggattttgaacgagtagtttccagattagctcgatgaaaataccaaagtattaggaactgag |
32084846 |
T |
|
| Q |
214 |
taaatttgcaatagttcaaggacta--gcaacctcctaagaaggaaaaagataatgaaatttagattctttcttgatttcaaaatgctggaattacttca |
311 |
Q |
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||||||||| |||| | ||| ||| |||||||||||||||||| ||||||||| |||| | |||| |||||||| ||||||||||||| || ||| |
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| T |
32084847 |
taaatttgctatagctagagggctaatataacctcctaagaaggaaatagataatgagattttaagtcttgcttgatttgaaaatgctggaatcacatca |
32084946 |
T |
|
| Q |
312 |
at |
313 |
Q |
| |
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|| |
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|
| T |
32084947 |
at |
32084948 |
T |
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Back To:
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