View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_5 (Length: 490)
Name: NF17870_low_5
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 26491689 - 26491217
Alignment:
| Q |
1 |
atatagttttggtgtaatattatttgagttgataacaggaaaaattccatatgcagtggaaaatggctctcaaagagattgggctggagaatatataaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26491689 |
atatagttttggtgtaatattatttgagttgataacaggaaaaattccatatgcagtggaaaatggctctcaaacagattgggctggagaatatataaga |
26491590 |
T |
|
| Q |
101 |
ggacaaccattgagagagatggttgatacaagcttgaactctttgaaagatgatgaaattgagaaatggtgtgaagtgattaacaattgtgtagatcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26491589 |
ggacaaccattgagagagatggttgatacaaggttgaactctttgaaagatgatgaaattgagaaatggtgtgaagtgattaacaattgtgtagatcttg |
26491490 |
T |
|
| Q |
201 |
atcaagaaacaagaccatcaatgaaagagattacatctaagttgaaggagattactgatatgggacctgatggagcaactccaaaatcatcccctctttg |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26491489 |
atcaagaaacaaggtcatcaatgaaagagattacatctaaattgaaggagattactgatatggggcctgatggagcaactccaaaatcatcccctctttg |
26491390 |
T |
|
| Q |
301 |
gtgggctgaaatagaaattatgtctgaggacatatgctaagctaagacatcagtttatggatttaattcatgtataatatcggtgttaagacggatccag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
26491389 |
gtgggctgaaatagaaattatgtctgaggacatatgctaagctaagacatcagtttatggatttaattcatgtataatatcggtgttaagatggattcag |
26491290 |
T |
|
| Q |
401 |
gaattttaagtagtgtaggcaacacatatatgtgtgtaacattttaatattaaagcataaatatgattctcat |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26491289 |
gaattttaagtagtgtaggcaacacatatatgtgtgtaacattttaatattaaagcataaatatgactctcat |
26491217 |
T |
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