View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_6 (Length: 489)
Name: NF17870_low_6
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Original strand, 12699840 - 12700316
Alignment:
| Q |
13 |
acctgtgaaatcgcttttcagaagcaaaactgtgtgcaaattatggtataggttgactttggataagtattttattcaattatacaatgatgtttctagg |
112 |
Q |
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| T |
12699840 |
acctgtgaaatcgcttttcagaagcaaaactgtgtgcaaattatggtataggttgactttggataagtattttattcaattatacaatgatgtttctagg |
12699939 |
T |
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| Q |
113 |
aagaatcctatgattcttgttgagatttcagattcattgttagaatccaaatctagtttgatttgtgttgataatttaaggggtgttttcgaattttcgc |
212 |
Q |
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| T |
12699940 |
aagaatcctatgattcttgttgagatttcagattcattgttagaatccaaatctagtttgatttgtgttgataatttaaggggtgttttcgaattttcgc |
12700039 |
T |
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| Q |
213 |
tgaattttttgaatgatagagttaaggttcgtgcgtcttgtaatggattgttgtgttgttctagtattccggatatgggggtttattatgtttgcaatcc |
312 |
Q |
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| T |
12700040 |
tgaattttttgaatgatagagttaaggttcgcgcgtcttgtaatggattgttgtgttgttctagtattccggatatgggggtttattatgtttgcaatcc |
12700139 |
T |
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| Q |
313 |
ggttacgcgtgagtttaggttgcttcctaagagtagggagaggcccgtgactcggttttatcctgatggtgaagctactttggttggtttggcttgtgat |
412 |
Q |
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| T |
12700140 |
ggttacgcgtgagtttaggttgcttcctaagagtagggagaggcccgtgactcggttttatcctgatggtgaagctactttggttggtttggcttgtgat |
12700239 |
T |
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| Q |
413 |
tcggcgtttcagaagttcaatgttgttcttgcgggtagtcataggacgtttggtcataggccggatgggaagtttat |
489 |
Q |
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| T |
12700240 |
tcggcgtttcagaagttcaatgttgttcttgcgggtagtcataggacgtttggtcataggccggatgggaagtttat |
12700316 |
T |
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