View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17870_low_8 (Length: 426)
Name: NF17870_low_8
Description: NF17870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17870_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 52798182 - 52797776
Alignment:
| Q |
10 |
ataattcttccatatatcctttaattttttatctttttctatcccataacgtgtccaagaggttatcaggcttttatgatgtgtcctagcgcgatgaaag |
109 |
Q |
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| T |
52798182 |
ataattcttccatatatcctttaattttttatctttttctatctcataacgtgtccaagaggttatcaggcttttatgatgtgtcctagcgcgatgaaag |
52798083 |
T |
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| Q |
110 |
tctagttggctctaaatttcatgatcaacaatttaggggaggataacctagcttat----gtctcttccatatacgatatnnnnnnnnnnnn------tt |
199 |
Q |
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| T |
52798082 |
tctagttggctctaaatttcatgatcaacaatttaggggaggataacctagcttatatatgtctcttccatatacgatataaaaaaaaaaaaaaaaaatt |
52797983 |
T |
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| Q |
200 |
aaagatcttccatatacaatcaataattggtatggaataagaaagtttttgacaacatctaggggatcacatgaacaaactatatagtcatagaagataa |
299 |
Q |
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| T |
52797982 |
aaagatcttccatatacaat----aattggtatggaataagaaagtttttgacaacatctaggggatcacatgaacaaactatatagtcatagaagataa |
52797887 |
T |
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| Q |
300 |
ttgcatttagaatttcttt--tttgagggatttgcatttagaaatattaacaatcaaacaaatcaatcatgatataattttttcacaaaacatctcggag |
397 |
Q |
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| T |
52797886 |
ttgcatttagatttttttttatttgagggatttgcatttagaaatattaacaagcaaacaaatcaatcatgatataattttttcacaaaacatctcggag |
52797787 |
T |
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| Q |
398 |
gttattagtaa |
408 |
Q |
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| T |
52797786 |
gttattagtaa |
52797776 |
T |
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