View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17871_high_1 (Length: 385)
Name: NF17871_high_1
Description: NF17871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17871_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 34738579 - 34738218
Alignment:
| Q |
8 |
catcatcatcatcatcgtcgtcaacgacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatctttctcttcagaaattttactacaaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738579 |
catcatcatcatcatcgtcgtcaacgacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatctttctcttcagaaattttactacaaca |
34738480 |
T |
|
| Q |
108 |
aatactcataaacccaagaatcatatcaaccaaagatttcacttccttcattactttcttctcctttttcacttcaaaaagtcccttaacaacactatgt |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34738479 |
aatactcataaacccaagaatcatatcaaccagagatttcacttccttcattactttcttctcctttttcacttcaaaaagttccttaacaacactatgt |
34738380 |
T |
|
| Q |
208 |
atcataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaacaaaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaa |
307 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738379 |
attataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaacaaaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaa |
34738280 |
T |
|
| Q |
308 |
tttgttccaagatatcacctttaagagattttctgcaaccaaatttgattgcagaatagacc |
369 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738279 |
tttgttccaagatatcacctttaagagattttctgcaaccaaatttgattgcagaatagacc |
34738218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 34594326 - 34593971
Alignment:
| Q |
14 |
catcatcatcgtcgtcaacgacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatctttctcttcagaaattttactacaacaaatact |
113 |
Q |
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|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34594326 |
catcatcatcatcatcatcgacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatcttcctcttcagaaattttactacaacaaatact |
34594227 |
T |
|
| Q |
114 |
cataaacccaagaatcatatcaaccaaagatttcacttccttcattactttcttctcctttttcacttcaaaaagtcccttaacaacactatgtatcata |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||| ||||||||||||||||||||||| |
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| T |
34594226 |
cataaacccaagaatcatatcaaccaaagatttcacttccttcattgctttcttttcccttttcaattcaaaaagttccttaacaacactatgtatcata |
34594127 |
T |
|
| Q |
214 |
aaaacaacaggagcaagtaaagcaatactctttgaaccaccaacaaaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgtt |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594126 |
aaaacaacaggagcaagtaaagcaatactctttgaaccaccaacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgtt |
34594027 |
T |
|
| Q |
314 |
ccaagatatcacctttaagagattttctgcaaccaaatttgattgcagaatagacc |
369 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34594026 |
ccaagttatcacctttaagagattttctgcaaccaaatttgattgcagaatagacc |
34593971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 34622328 - 34621980
Alignment:
| Q |
10 |
tcatcatcatcatcgtcgtcaacgacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatctttctcttcagaaattttactacaacaaa |
109 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34622328 |
tcatcatcatcatcattgtcaacgacccaaagacgag-----------aaagacaaaaccaaatccaaatctttctcttcagaaattttactacaacaaa |
34622240 |
T |
|
| Q |
110 |
tactcataaacccaagaatcatatcaaccaaagatttcacttccttcattactttcttctcctttttcacttcaaaaagtcccttaacaacactatgtat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||| ||||||||||||||||||| |
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| T |
34622239 |
tactcataaacccaagaatcatatcaaccaaagatttcacttccttcattgctttcttttcccttttcaattcaaaaagttccttaacaacactatgtat |
34622140 |
T |
|
| Q |
210 |
cataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaacaaaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34622139 |
cataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatt |
34622040 |
T |
|
| Q |
310 |
tgttccaagatatcacctttaagagattttctgcaaccaaatttgattgcagaatagacc |
369 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34622039 |
tgttccaagatatcacctttaagagattttctgcaaccaaatttgattgcagaatagacc |
34621980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 34749767 - 34749419
Alignment:
| Q |
10 |
tcatcatcatcatcgtcgtcaacgacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatctttctcttcagaaattttactacaacaaa |
109 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34749767 |
tcatcatcatcatcattgtcaacgacccaaagacgag-----------aaagacaaaaccaaatccaaatctttctcttcagaaattttactacaacaaa |
34749679 |
T |
|
| Q |
110 |
tactcataaacccaagaatcatatcaaccaaagatttcacttccttcattactttcttctcctttttcacttcaaaaagtcccttaacaacactatgtat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||| ||||||||||||||||||| |
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| T |
34749678 |
tactcataaacccaagaatcatatcaaccaaagatttcacttccttcattgctttcttttcccttttcaattcaaaaagttccttaacaacactatgtat |
34749579 |
T |
|
| Q |
210 |
cataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaacaaaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatt |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34749578 |
cataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatt |
34749479 |
T |
|
| Q |
310 |
tgttccaagatatcacctttaagagattttctgcaaccaaatttgattgcagaatagacc |
369 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34749478 |
tgttccaagatatcacctttaagagattttctgcaaccaaatttgattgcagaatagacc |
34749419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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