View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17871_high_2 (Length: 253)
Name: NF17871_high_2
Description: NF17871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17871_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 24274206 - 24273981
Alignment:
| Q |
10 |
aagaatatcatctttagccagaatttgcacccatctcactcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagagga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24274206 |
aagaatatcatctttagccagaatttgcacccatctcactcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagagga |
24274107 |
T |
|
| Q |
110 |
agcaacaacaacaatatcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaattacacttgataattgtagaaaaata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||| ||||||| || | | |||||| |
|
|
| T |
24274106 |
agcaacaacaacaatatcagataacgtagtaccttgtaaaaagtacaaagtactctgcttcacacctttcagaatcacacttg--aacccttg-aaaata |
24274010 |
T |
|
| Q |
210 |
tgtatagctccaccttcatttttaaaact |
238 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
24274009 |
tgtatagctccaccttcacttttaaaact |
24273981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 53471135 - 53471311
Alignment:
| Q |
10 |
aagaatatcatctttagccagaatttgca--cccatctcactcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagag |
107 |
Q |
| |
|
||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
53471135 |
aagaagattatctttagcaagaatttgcatccccctctcactcatatgcccaagcctcatatgccacaatttcgtcatatcttcttggtcaatctcgaag |
53471234 |
T |
|
| Q |
108 |
gaagcaacaacaacaatatcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
184 |
Q |
| |
|
|||||||||||| || ||||| || ||||||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
53471235 |
gaagcaacaacaccataatcagttagcgtagtaccttgtagaaagtacagagtacccctcttcacacctttcaaaat |
53471311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 9008945 - 9009089
Alignment:
| Q |
49 |
tcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtaccttgtag |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |||| ||||| |||||||| ||| |||||||||| |
|
|
| T |
9008945 |
tcatatgcccaagcctcatatgccacaacttcgtcatatcttcttagtcaatatcgaaggaagaaacagcaacataatcagatagtgtaataccttgtag |
9009044 |
T |
|
| Q |
149 |
aaagtaaaaagtaccttgcttcacacctttcaaaattacacttga |
193 |
Q |
| |
|
||| |||| ||||||| ||||| ||||||| | ||| |||||||| |
|
|
| T |
9009045 |
aaattaaagagtacctcgcttctcaccttttagaatcacacttga |
9009089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 13417446 - 13417622
Alignment:
| Q |
10 |
aagaatatcatctttagccagaatttgca-ccca-tctcactcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagag |
107 |
Q |
| |
|
||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |
|
|
| T |
13417446 |
aagaagattatctttagccagaatttgcatcccactctcactcatatgcccaagcctcatatgccacaacctcgtcatatctttatggtcaatctcggag |
13417545 |
T |
|
| Q |
108 |
gaagcaacaacaacaatatcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
184 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||||| | ||||| | | ||||||||||||||||| |
|
|
| T |
13417546 |
gaagcaacaacaacttaagcagatagtgtagtaccttgtagaaagtagagagtacatcgtttcacacctttcaaaat |
13417622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 28706524 - 28706395
Alignment:
| Q |
49 |
tcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtaccttgtag |
148 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || || ||||| || || ||||||||||| |
|
|
| T |
28706524 |
tcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaatcagttagtgtcgtaccttgtag |
28706425 |
T |
|
| Q |
149 |
aaagtaaaaagtaccttgcttcacaccttt |
178 |
Q |
| |
|
|||||| | |||||| ||||||||||||| |
|
|
| T |
28706424 |
aaagtatagagtaccccgcttcacaccttt |
28706395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 30047750 - 30047642
Alignment:
| Q |
16 |
atcatctttagccagaatttgca--cccatctcactcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagaggaagca |
113 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||| |
|
|
| T |
30047750 |
atcatctttagctagaatttgcatcccctactcactcatatgtccaagcctcatatgccacaacttcttcatttcttcttagtcaatctcggaggaagca |
30047651 |
T |
|
| Q |
114 |
acaacaaca |
122 |
Q |
| |
|
||||||||| |
|
|
| T |
30047650 |
acaacaaca |
30047642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 27367626 - 27367707
Alignment:
| Q |
63 |
ctcatatgccacaacttcgtcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtacctt |
144 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| || |||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
27367626 |
ctcatatgccacaattttgtcatatcttcttggtcaatttcggaggaagcaacaacaacagaatcagatagcatagtacctt |
27367707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 18726250 - 18726188
Alignment:
| Q |
82 |
tcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtacctt |
144 |
Q |
| |
|
|||||||||||||| |||| || |||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
18726250 |
tcatatcttcttggccaatttcggaggaagcaacaacaacataatcagatagcatagtacctt |
18726188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University