View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17871_low_1 (Length: 684)

Name: NF17871_low_1
Description: NF17871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17871_low_1
NF17871_low_1
[»] chr6 (40 HSPs)
chr6 (303-668)||(27703094-27703459)
chr6 (274-456)||(26852469-26852651)
chr6 (366-634)||(26059489-26059782)
chr6 (366-634)||(26079459-26079752)
chr6 (105-232)||(27702553-27702681)
chr6 (83-232)||(26627777-26627925)
chr6 (83-232)||(26733754-26733902)
chr6 (366-580)||(25486907-25487133)
chr6 (498-580)||(26146505-26146587)
chr6 (376-448)||(27079154-27079226)
chr6 (508-566)||(25583205-25583263)
chr6 (357-452)||(27661809-27661904)
chr6 (232-312)||(26626929-26627010)
chr6 (232-312)||(26732906-26732987)
chr6 (452-545)||(26852366-26852449)
chr6 (614-668)||(27682529-27682583)
chr6 (24-70)||(27730283-27730329)
chr6 (425-493)||(25986776-25986842)
chr6 (598-667)||(27078988-27079057)
chr6 (498-539)||(27423938-27423979)
chr6 (130-184)||(26629167-26629222)
chr6 (132-190)||(26639902-26639961)
chr6 (130-165)||(26650681-26650716)
chr6 (130-184)||(26735143-26735198)
chr6 (132-190)||(26745868-26745927)
chr6 (130-165)||(26756649-26756684)
chr6 (284-355)||(26888957-26889027)
chr6 (130-165)||(26963922-26963957)
chr6 (130-184)||(27423010-27423065)
chr6 (517-567)||(27662009-27662059)
chr6 (594-633)||(26852258-26852297)
chr6 (128-190)||(27506847-27506910)
chr6 (414-452)||(25514498-25514536)
chr6 (414-452)||(26146658-26146696)
chr6 (241-334)||(26806255-26806348)
chr6 (283-337)||(27423823-27423877)
chr6 (634-668)||(27715092-27715126)
chr6 (452-493)||(27079085-27079126)
chr6 (195-231)||(26963781-26963817)
chr6 (278-337)||(27589563-27589622)
[»] chr8 (1 HSPs)
chr8 (602-668)||(29270364-29270430)
[»] scaffold0003 (3 HSPs)
scaffold0003 (498-539)||(63384-63425)
scaffold0003 (130-184)||(64298-64353)
scaffold0003 (283-337)||(63486-63540)
[»] scaffold0349 (1 HSPs)
scaffold0349 (634-668)||(16818-16852)
[»] chr1 (1 HSPs)
chr1 (364-425)||(26140142-26140203)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-138; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 303 - 668
Target Start/End: Original strand, 27703094 - 27703459
Alignment:
Q  303 aagcatcctcaaatgtaaattgaaacaatattttaagattgcacaaacatcatccacaaaatattacatcatgtctcatcatttgaaaaacttctccaac 402  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||| |||||||||||| ||||||||||||    
T  27703094 aagcatccccaaatgtaaatagaaacaatattttaagattgcacaaacataatccagaaaatcttaaatcatgtatcatcatttgaataacttctccaac 27703193  T
Q  403 tagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaaccacaaacctccattgttgagattgagagttggcttta 502  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||  |||||    
T  27703194 tagaaacaacgaatttgtaattgactatatacagaaattaatcaacatttgtaaacagaaaatcacaaacctccaatgttgagattgagagttaacttta 27703293  T
Q  503 tgatggacctagaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaatatttaaatctcatccctatccgtcttgctttttgatgca 602  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |||| |||| ||||||||||| || ||| |||||||||||||||    
T  27703294 tgatggagctagaccaaggaatgtaccccacatcattctttcatcttgtgcattgtttaaaatttcaatctcatccccatgcgtgttgctttttgatgca 27703393  T
Q  603 cctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaat 668  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||||||||||    
T  27703394 cctagactaaggaatgtaccccatgtctttttttgttcctctttctttaaatcctgttgttgcaat 27703459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 274 - 456
Target Start/End: Complemental strand, 26852651 - 26852469
Alignment:
Q  274 tgctttcaatgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatattttaagattgcacaaacatcatccacaaaatattacatca 373  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||    
T  26852651 tgcttacaacgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatattttaagagtgcacaaacatcatcaacaaaatctcacatca 26852552  T
Q  374 tgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgtaa 456  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  26852551 tgtctcatcatttgaaaaacttctccaactagaaacaacgaatttgcaattgactatatacagaaattaatcaacatttgtaa 26852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 366 - 634
Target Start/End: Complemental strand, 26059782 - 26059489
Alignment:
Q  366 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgta---------a 456  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| |||||| |||||||||||||||||||||| ||         |    
T  26059782 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtataa 26059683  T
Q  457 acagcaaaccacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttc 540  Q
    ||| |||| ||||||||| || |||||||||||||||                ||  |||||||||||||||| ||| |||||||||||| |||||||||    
T  26059682 acatcaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatctttc 26059583  T
Q  541 tttcatcttgtgcactgcttaatatttaaatctcatccctatccgtcttgctttttgatgcacctagactaaggaatgtaccacatgtctttct 634  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  26059582 tttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26059489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 366 - 634
Target Start/End: Complemental strand, 26079752 - 26079459
Alignment:
Q  366 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgta---------a 456  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| |||||| |||||||||||||||||||||| ||         |    
T  26079752 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtataa 26079653  T
Q  457 acagcaaaccacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttc 540  Q
    ||| |||| ||||||||| || |||||||||||||||                ||  |||||||||||||||| ||| |||||||||||| |||||||||    
T  26079652 acatcaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatctttc 26079553  T
Q  541 tttcatcttgtgcactgcttaatatttaaatctcatccctatccgtcttgctttttgatgcacctagactaaggaatgtaccacatgtctttct 634  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  26079552 tttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26079459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 27702553 - 27702681
Alignment:
Q  105 ttagaaatatcacttcctcattttatgatataagatgaagtttgtatctaatttgacctgt-ggacaaaagctacatatttacattagcggtctttttca 203  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||||||||    
T  27702553 ttagaaacatcactttctcattttatgatataagatgaagtttgtatctaatttgacctgtgggataaaagctacacgtttacattaacggtctttttca 27702652  T
Q  204 aatgacctttcataaagattatgattaaa 232  Q
    ||| | |||||||||||||||||||||||    
T  27702653 aataatctttcataaagattatgattaaa 27702681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 26627925 - 26627777
Alignment:
Q  83 atagggagattgaaggaagatgttagaaatatcacttcctcattttatgatataagatgaagtttgtatctaatttgacctgt-ggacaaaagctacata 181  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||   |  |||||| |||||||||||||  |    
T  26627925 atagggagattgaaggaagatgttaaaaacatcacttcctcattttatactataagatgaagtttgtatctccct--acctgtcggacaaaagctactca 26627828  T
Q  182 tttacattagcggtctttttcaaatgacctttcataaagattatgattaaa 232  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  26627827 tttacattaacggtctttttcaaatgatctttcataaagattatgattaaa 26627777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 26733902 - 26733754
Alignment:
Q  83 atagggagattgaaggaagatgttagaaatatcacttcctcattttatgatataagatgaagtttgtatctaatttgacctgt-ggacaaaagctacata 181  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||   |  |||||| |||||||||||||  |    
T  26733902 atagggagattgaaggaagatgttaaaaacatcacttcctcattttatactataagatgaagtttgtatctccct--acctgtcggacaaaagctactca 26733805  T
Q  182 tttacattagcggtctttttcaaatgacctttcataaagattatgattaaa 232  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  26733804 tttacattaacggtctttttcaaatgatctttcataaagattatgattaaa 26733754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 366 - 580
Target Start/End: Complemental strand, 25487133 - 25486907
Alignment:
Q  366 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaac 465  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| ||||||||||||||||||  ||||||||| ||  || ||||     
T  25487133 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactatatacagaaatt--tcaacatttata--caacaaag 25487038  T
Q  466 cacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttctttcatctt 549  Q
    ||||||||| || |||||||||||||||                ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25487037 cacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctagactaaggaatgtacccaacatctttctttcatctt 25486938  T
Q  550 gtgcactgcttaatatttaaatctcatccct 580  Q
    | |||||||||||||||| ||||||||||||    
T  25486937 gcgcactgcttaatatttcaatctcatccct 25486907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 498 - 580
Target Start/End: Complemental strand, 26146587 - 26146505
Alignment:
Q  498 ctttatgatggacctagaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaatatttaaatctcatccct 580  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  26146587 ctttatgatggacctagactaaggaatgtacccaacatctttctttcatcttgcgcactgcttaatatttcaatctcatccct 26146505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 27079226 - 27079154
Alignment:
Q  376 tctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaac 448  Q
    ||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  27079226 tctcatcatttaaaaaacttgtccaactagaaacaacaaatttgtaattgaatatatacagaaattaatcaac 27079154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 508 - 566
Target Start/End: Complemental strand, 25583263 - 25583205
Alignment:
Q  508 gacctagaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaatatt 566  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25583263 gacctaaaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaatatt 25583205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 357 - 452
Target Start/End: Original strand, 27661809 - 27661904
Alignment:
Q  357 cacaaaatattacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacattt 452  Q
    |||| ||| |||||||||||||||| |||| |  |||||||||| ||| ||||||  ||||| |||||||||||||||||||||||||||| ||||    
T  27661809 cacataatcttacatcatgtctcatgatttaagcaacttctccatctataaacaatgaatttgtaattgactatatacagaaattaatcaatattt 27661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 26627010 - 26626929
Alignment:
Q  232 atcgtattggtgttggacacagacacatgttggataccaa-catgctttcaatgagaagtgtttgtgctacaaagcatcctc 312  Q
    ||||| ||||||||| |||| ||||||||||| ||||||  ||||| ||||||||||||||||||| |||||||||||||||    
T  26627010 atcgtgttggtgttgtacacggacacatgttgcataccagtcatgccttcaatgagaagtgtttgttctacaaagcatcctc 26626929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 26732987 - 26732906
Alignment:
Q  232 atcgtattggtgttggacacagacacatgttggataccaa-catgctttcaatgagaagtgtttgtgctacaaagcatcctc 312  Q
    ||||| ||||||||| |||| ||||||||||| ||||||  ||||| ||||||||||||||||||| |||||||||||||||    
T  26732987 atcgtgttggtgttgtacacggacacatgttgcataccagtcatgccttcaatgagaagtgtttgttctacaaagcatcctc 26732906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 545
Target Start/End: Complemental strand, 26852449 - 26852366
Alignment:
Q  452 tgtaaacagcaaaccacaaacctccattgttgagattgagagttggctttatgatggacctagaccaaggaatgtacccaacatctttctttca 545  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||||||          ||||||||||||||||| ||||||||||||||    
T  26852449 tgtaaacagcaaaccacaaacctccaatgttgagattgagagttaactttat----------gaccaaggaatgtaccctacatctttctttca 26852366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 614 - 668
Target Start/End: Complemental strand, 27682583 - 27682529
Alignment:
Q  614 gaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaat 668  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||    
T  27682583 gaatgtaccccatgtctttctttgttcctctttcatcaattcctgttgttgcaat 27682529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 27730283 - 27730329
Alignment:
Q  24 actttgcaaatcaatgaaaatggtaaacatgcttatatattgaagac 70  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  27730283 actttgcaaatcaatgaaaatgctaaacatgcttatatgttgaagac 27730329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 493
Target Start/End: Complemental strand, 25986842 - 25986776
Alignment:
Q  425 gactatatacagaaattaatcaacatttgtaaacagcaaaccacaaacctccattgttgagattgagag 493  Q
    |||||||||||||||||||||||||||  || ||| |||| ||||||||| || |||||||||||||||    
T  25986842 gactatatacagaaattaatcaacatt--tatacaacaaagcacaaacctgcaatgttgagattgagag 25986776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 667
Target Start/End: Complemental strand, 27079057 - 27078988
Alignment:
Q  598 atgcacctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaa 667  Q
    |||||||||||| |||||||||||| ||||||||||||| |||| ||||  |||| |||| |||||||||    
T  27079057 atgcacctagacaaaggaatgtaccccatgtctttctttcttccacttttatcaattccttttgttgcaa 27078988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 539
Target Start/End: Original strand, 27423938 - 27423979
Alignment:
Q  498 ctttatgatggacctagaccaaggaatgtacccaacatcttt 539  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  27423938 ctttatgatgaacctagaccaaggaatgtacccaacatcttt 27423979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 26629222 - 26629167
Alignment:
Q  130 tgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatattt 184  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||    
T  26629222 tgatataagatgaaatttgtatctaatttgacctgttggacaaaagatacagattt 26629167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 26639961 - 26639902
Alignment:
Q  132 atataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatatttacatta 190  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||| ||| ||||||||||    
T  26639961 atataagatgaagtgtgtatctaatttgacctgttggacgaaagcaacacatttacatta 26639902  T

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Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 26650716 - 26650681
Alignment:
Q  130 tgatataagatgaagtttgtatctaatttgacctgt 165  Q
    ||||||||||||||||||||||||||||||||||||    
T  26650716 tgatataagatgaagtttgtatctaatttgacctgt 26650681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 26735198 - 26735143
Alignment:
Q  130 tgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatattt 184  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||    
T  26735198 tgatataagatgaaatttgtatctaatttgacctgttggacaaaagatacagattt 26735143  T

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Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 26745927 - 26745868
Alignment:
Q  132 atataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatatttacatta 190  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||| ||| ||||||||||    
T  26745927 atataagatgaagtgtgtatctaatttgacctgttggacgaaagcaacacatttacatta 26745868  T

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Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 26756684 - 26756649
Alignment:
Q  130 tgatataagatgaagtttgtatctaatttgacctgt 165  Q
    ||||||||||||||||||||||||||||||||||||    
T  26756684 tgatataagatgaagtttgtatctaatttgacctgt 26756649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 26889027 - 26888957
Alignment:
Q  284 gagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatattttaagattgcacaaacatcat 355  Q
    ||||||||| |||||||||||||||| || |  |||||||||||||||||||| ||| ||||||||| ||||    
T  26889027 gagaagtgtatgtgctacaaagcatcttccacagtaaattgaaacaatatttt-agactgcacaaacttcat 26888957  T

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Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 26963957 - 26963922
Alignment:
Q  130 tgatataagatgaagtttgtatctaatttgacctgt 165  Q
    ||||||||||||||||||||||||||||||||||||    
T  26963957 tgatataagatgaagtttgtatctaatttgacctgt 26963922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 27423010 - 27423065
Alignment:
Q  130 tgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatattt 184  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||    
T  27423010 tgatataagatgaagtttgtatctaaattgacctgttggacaaaagatacacattt 27423065  T

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Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 567
Target Start/End: Original strand, 27662009 - 27662059
Alignment:
Q  517 caaggaatgtacccaacatctttctttcatcttgtgcactgcttaatattt 567  Q
    |||||||||||||| |||| ||||||||||||||| ||||| |||||||||    
T  27662009 caaggaatgtaccccacatatttctttcatcttgtccactgtttaatattt 27662059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 633
Target Start/End: Complemental strand, 26852297 - 26852258
Alignment:
Q  594 tttgatgcacctagactaaggaatgtaccacatgtctttc 633  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  26852297 tttgatgcacctagactaaggaatgtaccccaagtctttc 26852258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 27506847 - 27506910
Alignment:
Q  128 tatgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatatttacatta 190  Q
    |||||||||||||||||||| |||||||||| || || |||||||||||||   ||||||||||    
T  27506847 tatgatataagatgaagtttctatctaatttcacttgttggacaaaagctatccatttacatta 27506910  T

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Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 452
Target Start/End: Complemental strand, 25514536 - 25514498
Alignment:
Q  414 aatttttaattgactatatacagaaattaatcaacattt 452  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  25514536 aatttgtaactgactatatacagaaattaatcaacattt 25514498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 452
Target Start/End: Complemental strand, 26146696 - 26146658
Alignment:
Q  414 aatttttaattgactatatacagaaattaatcaacattt 452  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  26146696 aatttgtaactgactatatacagaaattaatcaacattt 26146658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 26806348 - 26806255
Alignment:
Q  241 gtgttggacacagacacatgttggatacca-acatgctttcaatgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatatt 334  Q
    |||||| | ||| |||||||||||  |||| |||||||| ||| | ||||||||||||||||||| |||||||||   |||||| ||||||||||    
T  26806348 gtgttgaaaacaaacacatgttgggcaccagacatgctt-caacgggaagtgtttgtgctacaaaacatcctcaacattaaattcaaacaatatt 26806255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 27423823 - 27423877
Alignment:
Q  283 tgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatatttta 337  Q
    |||||||||| ||||||||||||||||||| |  |||| ||||| ||||||||||    
T  27423823 tgagaagtgtatgtgctacaaagcatcctccacagtaagttgaagcaatatttta 27423877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 668
Target Start/End: Original strand, 27715092 - 27715126
Alignment:
Q  634 tttgttcctctttcgtcaaatcctgttgttgcaat 668  Q
    ||||||||||||||||||||||||| |||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaat 27715126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 27079126 - 27079085
Alignment:
Q  452 tgtaaacagcaaaccacaaacctccattgttgagattgagag 493  Q
    ||||||||||||| ||||||||| || |||||||||||||||    
T  27079126 tgtaaacagcaaagcacaaaccttcaatgttgagattgagag 27079085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 26963817 - 26963781
Alignment:
Q  195 tctttttcaaatgacctttcataaagattatgattaa 231  Q
    ||||||||||| || ||||||||||||||||||||||    
T  26963817 tctttttcaaaagatctttcataaagattatgattaa 26963781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 27589563 - 27589622
Alignment:
Q  278 ttcaatgagaagtgtttgtgctacaaagcatcct-caaatgtaaattgaaacaatatttta 337  Q
    ||||||||||| ||||||||||||||| |||||| || || |||||| |||||||||||||    
T  27589563 ttcaatgagaattgtttgtgctacaaaacatcctgcacat-taaattcaaacaatatttta 27589622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 602 - 668
Target Start/End: Original strand, 29270364 - 29270430
Alignment:
Q  602 acctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaat 668  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29270364 acctagactaaggtatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaat 29270430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 539
Target Start/End: Complemental strand, 63425 - 63384
Alignment:
Q  498 ctttatgatggacctagaccaaggaatgtacccaacatcttt 539  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  63425 ctttatgatgaacctagaccaaggaatgtacccaacatcttt 63384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 64353 - 64298
Alignment:
Q  130 tgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatattt 184  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||    
T  64353 tgatataagatgaagtttgtatctaaattgacctgttggacaaaagatacacattt 64298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 63540 - 63486
Alignment:
Q  283 tgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatatttta 337  Q
    |||||||||| ||||||||||||||||||| |  |||| ||||| ||||||||||    
T  63540 tgagaagtgtatgtgctacaaagcatcctccacagtaagttgaagcaatatttta 63486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 668
Target Start/End: Complemental strand, 16852 - 16818
Alignment:
Q  634 tttgttcctctttcgtcaaatcctgttgttgcaat 668  Q
    ||||||||||||||||||||||||| |||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaat 16818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 26140203 - 26140142
Alignment:
Q  364 tattacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattg 425  Q
    |||||||||| |||||||||||| ||||||||||| | ||||||| ||  ||||| ||||||    
T  26140203 tattacatcaggtctcatcatttcaaaaacttctctagctagaaataatgaatttgtaattg 26140142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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