View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17872_high_3 (Length: 368)
Name: NF17872_high_3
Description: NF17872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17872_high_3 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 92 - 351
Target Start/End: Complemental strand, 28699786 - 28699528
Alignment:
| Q |
92 |
tgaatatgaacaacctttcaattggtctagggaccatagcaaattccaattgatttttcaaactttgttagttgtttataaaattgttgctccaacattg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28699786 |
tgaatatgaacaacctttcaattggtctagggaccatagaaaattccaattgatttttcaaactttgttagttgtttataaaattgttgctccaacattg |
28699687 |
T |
|
| Q |
192 |
caacatgaattttgttttgttagataagccttccaatagagaccatttcaatctcaacagccagtttcttcatttattaggatagtaattaaatacataa |
291 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28699686 |
caacatgaattttgttt-gctagataagccttccaatagagaccttttcaatctcaacagccagtttcttcatttattaggatagtaattaaatacataa |
28699588 |
T |
|
| Q |
292 |
ttgtttcttcattcttaggtctgagcttaagaatgcaattcgagaagggggtgtcccatt |
351 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28699587 |
ttgtttcttcattcttaggtctgaccttaagaatgcaattcgagaagggggtgtcccatt |
28699528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 144 - 351
Target Start/End: Complemental strand, 28643468 - 28643257
Alignment:
| Q |
144 |
atttttcaaactttgttagttgtttataaaattgttgctccaacattgcaacatgaattttgttttgttagataagccttccaatagagaccatttcaat |
243 |
Q |
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|||||||||||||| || ||||||||||||| |||||||||| |||||||||||| |||| |||| ||||||||||||||||| ||||| ||||||| |
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| T |
28643468 |
atttttcaaacttttgtaattgtttataaaatagttgctccaatattgcaacatgattttt--tttgctagataagccttccaattgagactttttcaat |
28643371 |
T |
|
| Q |
244 |
ctcaacagccagtttcttcatttattaggatagtaattaaatacataatt----gtttc--ttcattcttaggtctgagcttaagaatgcaattcgagaa |
337 |
Q |
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| T |
28643370 |
ctcaacagccagtttcttcatttattaggaaagtaattgaatacataatttctcgtttctattttttcataggtctgagcttaataatgcaattcgagaa |
28643271 |
T |
|
| Q |
338 |
gggggtgtcccatt |
351 |
Q |
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|||||||||||||| |
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| T |
28643270 |
gggggtgtcccatt |
28643257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 144 - 351
Target Start/End: Complemental strand, 28652420 - 28652209
Alignment:
| Q |
144 |
atttttcaaactttgttagttgtttataaaattgttgctccaacattgcaacatgaattttgttttgttagataagccttccaatagagaccatttcaat |
243 |
Q |
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|||||||||||||| || ||||||||||||| |||||||||| |||||||||||| |||| |||| ||||||||||||||||| ||||| ||||||| |
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| T |
28652420 |
atttttcaaacttttgtaattgtttataaaatagttgctccaatattgcaacatgattttt--tttgctagataagccttccaattgagactttttcaat |
28652323 |
T |
|
| Q |
244 |
ctcaacagccagtttcttcatttattaggatagtaattaaatacataatt----gtttc--ttcattcttaggtctgagcttaagaatgcaattcgagaa |
337 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| || ||| ||||||||||||||| ||||||||||||||| |
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| T |
28652322 |
ctcaacagccagtttcttcatttattaggaaagtaattgaatacataatttctcgtttctattttttcataggtctgagcttaataatgcaattcgagaa |
28652223 |
T |
|
| Q |
338 |
gggggtgtcccatt |
351 |
Q |
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|||||||||||||| |
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| T |
28652222 |
gggggtgtcccatt |
28652209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 28699834 - 28699771
Alignment:
| Q |
16 |
attgcaccaaagaaataattgaatatcaacaacctccccttaaaaaattgaatatgaacaacct |
79 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28699834 |
attgtaccaaagaaataattgaatatcaacaacctccccttaaaaaattgaatatgaacaacct |
28699771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 28625677 - 28625583
Alignment:
| Q |
256 |
tttcttcatttattaggatagtaattaaatacataattgtttcttcattcttaggtctgagcttaagaatgcaattcgagaagggggtgtcccatt |
351 |
Q |
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||||||||||||||| || |||||||||||| |||||| |||||||||||||| ||| | ||||||||||||||||||| |||| ||||||||||| |
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| T |
28625677 |
tttcttcatttattatgaaagtaattaaataaataatt-tttcttcattcttaagtccgggcttaagaatgcaattcgaaaaggcggtgtcccatt |
28625583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 28710621 - 28710563
Alignment:
| Q |
293 |
tgtttcttcattcttaggtctgagcttaagaatgcaattcgagaagggggtgtcccatt |
351 |
Q |
| |
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||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
28710621 |
tgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccatt |
28710563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 28717968 - 28717910
Alignment:
| Q |
293 |
tgtttcttcattcttaggtctgagcttaagaatgcaattcgagaagggggtgtcccatt |
351 |
Q |
| |
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||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
28717968 |
tgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccatt |
28717910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 28739367 - 28739312
Alignment:
| Q |
288 |
ataattgtttcttcattcttaggtctgagcttaagaatgcaattcgagaagggggt |
343 |
Q |
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|||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||| |
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| T |
28739367 |
ataattgtttattcatttttaggtccgagcttaataatgcaattcgagaagggggt |
28739312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 28725389 - 28725345
Alignment:
| Q |
299 |
ttcattcttaggtctgagcttaagaatgcaattcgagaagggggt |
343 |
Q |
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|||||||||||||| |||| || ||||||||||||||||||||| |
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| T |
28725389 |
ttcattcttaggtcccagctcaataatgcaattcgagaagggggt |
28725345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 144 - 351
Target Start/End: Original strand, 6309 - 6526
Alignment:
| Q |
144 |
atttttcaaactttgttagttgtttataaaattgttgctccaacattgcaacatgaattttgttttgttagataagccttccaata--gagaccatttca |
241 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||| ||||| |
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| T |
6309 |
atttttcaaacttttgtaattgtttataaaatagttgctccaatattgcaacatgaattt--ttttgctagataagccttccaatattgagactttttca |
6406 |
T |
|
| Q |
242 |
atctcaacagccagtttcttcatttattaggatagtaattaaatacataatt----gtttc------ttcattcttaggtctgagcttaagaatgcaatt |
331 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||| || ||||||||||| ||||| | |||||||||||||||| |||| ||||||||| |
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| T |
6407 |
atctcaagagccagtttcttcatttattaggaaagtatttgaatacataatttctcgtttctatttttccattcttaggtctgagtttaataatgcaatt |
6506 |
T |
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| Q |
332 |
cgagaagggggtgtcccatt |
351 |
Q |
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|||||||||||||||||||| |
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| T |
6507 |
cgagaagggggtgtcccatt |
6526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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