View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17872_high_4 (Length: 260)
Name: NF17872_high_4
Description: NF17872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17872_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 41186244 - 41186089
Alignment:
| Q |
16 |
atatagccactagaatggaaaatccattttggattggacatcatcgttagacctttatgataatgctggcctttatttcttacccaaaccaagttaaatc |
115 |
Q |
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| T |
41186244 |
atatggccactagaatggaaaatccattttggattggacatcatcgttagacctttatgataatgttggcctttatttattactcaaaccaagttaaatc |
41186145 |
T |
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| Q |
116 |
attccattgcgnnnnnnnnntttaatacaattataaaagaaataaaagtcatttcaa |
172 |
Q |
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| T |
41186144 |
attccattgc-aaaaaaatatttaatacaattataaaggaaataaaagtcatttcaa |
41186089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 41186091 - 41186039
Alignment:
| Q |
194 |
caaagagtgagcactaccattggtttgttgttaggagtatctaggaacatatt |
246 |
Q |
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| T |
41186091 |
caaagcgtgagcactaccattggtttgttgttaggagtatctaggatcatatt |
41186039 |
T |
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