View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17873_high_10 (Length: 422)
Name: NF17873_high_10
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_10 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 51 - 422
Target Start/End: Original strand, 24279335 - 24279706
Alignment:
| Q |
51 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24279335 |
gccttatttcttctacctatttttcttattttttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat |
24279434 |
T |
|
| Q |
151 |
ccgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgt |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24279435 |
ccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacgcgtaaagatcggaaagataaaacctgaacgt |
24279534 |
T |
|
| Q |
251 |
tatttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctct |
350 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24279535 |
tatttttctctctgagtctcgagtgacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaatttgtagaattctct |
24279634 |
T |
|
| Q |
351 |
ttacaaagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcataa |
422 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24279635 |
ttacaaagatattacatacatacttgaacaaatcatgttagttactttcaaatcaactgtcgaaactcataa |
24279706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 52 - 422
Target Start/End: Original strand, 19912695 - 19913053
Alignment:
| Q |
52 |
ccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaatc |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19912695 |
ccttatttcttctacctatttttcttatttgttg-------------cataat-aagaaattggaactaactcgcccattatcctatctattcgccaatc |
19912780 |
T |
|
| Q |
152 |
cgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgtt |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
19912781 |
cgagtaaagacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgtaaaaatcggaaagataaaacctggacgtt |
19912880 |
T |
|
| Q |
252 |
at--ttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctc |
349 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19912881 |
atatttttctctctgagtctcgagtgacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtaaaattctc |
19912980 |
T |
|
| Q |
350 |
tttacaaagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcataa |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
19912981 |
tttacaaagatattacatacatactcgaacaaatcatgttagttactttcaaatcaatcgtcgaaactcataa |
19913053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 57 - 421
Target Start/End: Complemental strand, 3301636 - 3301271
Alignment:
| Q |
57 |
tttcttctacctatttttcttatttgttgtgctcttttctctcataatt-aagaaattggaactaactcgcccattatcctatttattcgccaatccgag |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3301636 |
tttcttctacctatttttcttatttgttgtgctcttttctctcatattttaagaaattggaactaactcgcccatcatcctatttattcgccaatccgag |
3301537 |
T |
|
| Q |
156 |
taaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgttattt |
255 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3301536 |
taaaaacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgttattt |
3301437 |
T |
|
| Q |
256 |
ttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctctttaca |
355 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3301436 |
ttctctctgagtcacgagagatgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctctttaca |
3301337 |
T |
|
| Q |
356 |
aagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcata |
421 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
3301336 |
aagatattacatacatactcaaacaaatcatgttagttactttcaaatcaactgtcaaaacccata |
3301271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 51 - 422
Target Start/End: Original strand, 26906968 - 26907339
Alignment:
| Q |
51 |
gccttatttcttctacctatttttctt-atttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26906968 |
gccttatttcttctacctatttttctttatttgttgtgctcttttctctcataat-aagaaattggaactaactcgcccattatcctatctattcgccaa |
26907066 |
T |
|
| Q |
150 |
tccgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacg |
249 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26907067 |
tccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgtaaagatcggaaagatgaaacctgaacg |
26907166 |
T |
|
| Q |
250 |
ttatttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctc |
349 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
26907167 |
ttatttttttctctgagtcatgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttggcgctcttgttaattcgtagaattctc |
26907266 |
T |
|
| Q |
350 |
tttacaaagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcataa |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26907267 |
tttacaaagatattacatacatactcgaacaaatcatgttagttactttcaaatcaactgtcgaaacccataa |
26907339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 51 - 422
Target Start/End: Original strand, 36283017 - 36283387
Alignment:
| Q |
51 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
36283017 |
gccttatttcttctacctatttttcttatttgttgtggtcttttctctcataat-aagaaattggaactaactcgcccattatcctatctgttcgccaat |
36283115 |
T |
|
| Q |
151 |
ccgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgt |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36283116 |
ccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttcccaatatacaattgtcctacgcgtaaagatcggaaagataaaacctgaacgt |
36283215 |
T |
|
| Q |
251 |
tatttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctct |
350 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36283216 |
tatttttctctctgagtctcgagtgacattgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtaaaattctct |
36283315 |
T |
|
| Q |
351 |
ttacaaagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcataa |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
36283316 |
ttacaaagatattacatacatactcgaacaaatcatgttagttactttcaaatcaatcgttgaaactcataa |
36283387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 57 - 422
Target Start/End: Complemental strand, 8671330 - 8670964
Alignment:
| Q |
57 |
tttcttctacctatttttcttatttgttgtgctcttttctctcataatt-aagaaattggaactaactcgcccattatcctatttattcgccaatccgag |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8671330 |
tttcttctacctatttttcttatttgttgtgctcttttctctcataatttaagaaattggaaataactcgcccattatgctatttattcgccaatccgag |
8671231 |
T |
|
| Q |
156 |
taaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgttattt |
255 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8671230 |
taaaaacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgtaaagatcggaaagatgaaacctgaacgttattt |
8671131 |
T |
|
| Q |
256 |
ttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctctttaca |
355 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8671130 |
ttctctttgagtcacgagagacgttgttacggttgtgtagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctctttaca |
8671031 |
T |
|
| Q |
356 |
aagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcataa |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
8671030 |
aagatattacatacatactcgaacaaatcatgttagttactttcaaatcaactgttgaaacccataa |
8670964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 51 - 301
Target Start/End: Original strand, 22620640 - 22620889
Alignment:
| Q |
51 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
22620640 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataat-aagaaattggaactaactcgctcattatcctatctattcgccaat |
22620738 |
T |
|
| Q |
151 |
ccgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgt |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22620739 |
ccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgc |
22620838 |
T |
|
| Q |
251 |
tatttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcc |
301 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
22620839 |
tatttttctctctgagtctcgagtgatgttgttacggttgtgcagtgttcc |
22620889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 91 - 306
Target Start/End: Complemental strand, 11233690 - 11233475
Alignment:
| Q |
91 |
ttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaatccgagtaaatacaaaaatataataggctatcaaagaatac |
190 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||| |||||| |||| || |
|
|
| T |
11233690 |
ttttctctcataattaagaatttggaactaactcgcacattatcctacttattcgccaatccgaataaaaacaaaaatataataagctatcgaagagtaa |
11233591 |
T |
|
| Q |
191 |
gtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgttatttttctctctgagtctcgagagacgttgttacggttg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11233590 |
gtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgttatttttctctctgagtctcgaatgacgttgttacggttg |
11233491 |
T |
|
| Q |
291 |
tgcagtgttcccttgg |
306 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11233490 |
tgcagtgttcccttgg |
11233475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 19007387 - 19007438
Alignment:
| Q |
255 |
tttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttgg |
306 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19007387 |
tttctctctgagtctcgagtgacgttgttacggttgtgcagtgttcccttgg |
19007438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 57 - 422
Target Start/End: Complemental strand, 38838617 - 38838251
Alignment:
| Q |
57 |
tttcttctacctatttttcttatttgttgtgctcttttctctcataatt-aagaaattggaactaactcgcccattatcctatttattcgccaatccgag |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38838617 |
tttcttctacctatttttcttatttgttgtgcttttttctctcataatttaagaaattggaactaactcgcccattatcctatttatttgccaatccgag |
38838518 |
T |
|
| Q |
156 |
taaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgttattt |
255 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38838517 |
taaaaacaaaaatataataggctatcaaagaataagtcggttctcaatatacaattgtcctacacgtaaagatcggaaagatgaaacctgaacgttattt |
38838418 |
T |
|
| Q |
256 |
ttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctctttaca |
355 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38838417 |
ttctttctgagtcacgagagacgttgttacggttgcgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctctttaca |
38838318 |
T |
|
| Q |
356 |
aagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcataa |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
38838317 |
aagatattacatacatactcgaacaaatcatgttagttactttcaaatcaactgtcgaaacccataa |
38838251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 52 - 422
Target Start/End: Original strand, 40571188 - 40571546
Alignment:
| Q |
52 |
ccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaatc |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40571188 |
ccttatttcttctacctatttttcttatttgttg-------------cataat-aagaaattggaactaactcgcccattatcctatctattcgccaatc |
40571273 |
T |
|
| Q |
152 |
cgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgtt |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
40571274 |
cgagtaaagacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgtaaaaatcggaaagataaaacctggacgtt |
40571373 |
T |
|
| Q |
252 |
at--ttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctc |
349 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40571374 |
atatttttctctctgagtctcgagtgacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtaaaattctc |
40571473 |
T |
|
| Q |
350 |
tttacaaagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcataa |
422 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
40571474 |
tttacaaatatattacatacatactcgaacaaatcatgttagttactttcaaatcaatcgtcgaaactcataa |
40571546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 51 - 306
Target Start/End: Complemental strand, 40934733 - 40934478
Alignment:
| Q |
51 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40934733 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat |
40934634 |
T |
|
| Q |
151 |
ccgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgt |
250 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40934633 |
ccgagtaaaaacaaaaatataataagctatcaaagaataagtcagttctcaatatacaattgtcctacgcgtaaagatcggaaagataaaacctgaacgt |
40934534 |
T |
|
| Q |
251 |
tatttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttgg |
306 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
40934533 |
tatttttctctctaagtctcgagtgacgttgttacggttgtgcagtgtttccttgg |
40934478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 51 - 422
Target Start/End: Complemental strand, 18558719 - 18558350
Alignment:
| Q |
51 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18558719 |
gccttatttcttctacctatttttcttatttgttgtactcttttctctcataat-aagaaattggaactaactcgcccattatcctatctattcgccaat |
18558621 |
T |
|
| Q |
151 |
ccgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgt |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18558620 |
ccgagtaaaaacaaaaatataataggctatcgaagaataagttagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgt |
18558521 |
T |
|
| Q |
251 |
tatttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaattcgtagaattctct |
350 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
18558520 |
tatttttctctctgagtctcgagtgacgttgttacgggtgtgcagtgttcccttggttcgttgaagttcttgcccctcttgttaatt-ggagaattctct |
18558422 |
T |
|
| Q |
351 |
ttacaaagatattacatacatactcgaacaaatcatgttagttacttttaaatcaactgtcgaaactcataa |
422 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
18558421 |
ttacaaaaatattacatacatactcgaacaaatcatgttagttactttcaaatcaattgtcgaaactcataa |
18558350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 51 - 301
Target Start/End: Original strand, 20010539 - 20010788
Alignment:
| Q |
51 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20010539 |
gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataat-aagaaattggaactaactcgcccattatcctatctattcgccaat |
20010637 |
T |
|
| Q |
151 |
ccgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgt |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20010638 |
ccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgtaaagatcggaaagataaaacctgaacgc |
20010737 |
T |
|
| Q |
251 |
tatttttctctctgagtctcgagagacgttgttacggttgtgcagtgttcc |
301 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
20010738 |
tatttttctctctgagtctcgagtgatgttgttacggttgtgcagtgttcc |
20010788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 105 - 299
Target Start/End: Complemental strand, 8166388 - 8166192
Alignment:
| Q |
105 |
taagaaattggaactaactcgcccattatcctatttattcgccaatccgagtaaatacaaaaatataataggctatcaaagaatacgtcagttctcaata |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
8166388 |
taagaaattggaactaactcgcccattatcctatctattcgccaattcgagtaaagacaaaaatataataggctatcgaagaataagtcagttctcaata |
8166289 |
T |
|
| Q |
205 |
tacaattgtcctacacgtaaagatcggaaagataaaacctgaacgt--tatttttctctctgagtctcgagagacgttgttacggttgtgcagtgtt |
299 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
8166288 |
tacaattgtcctacacgtaaaaatcggaaagataaaacctggacgttatatttttctctctgactctcgagtgacgttgttacggttgtgcagtgtt |
8166192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 8166427 - 8166394
Alignment:
| Q |
52 |
ccttatttcttctacctatttttcttatttgttg |
85 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
8166427 |
ccttatttcttctatctatttttcttatttgttg |
8166394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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