View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_high_11 (Length: 419)
Name: NF17873_high_11
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 42485011 - 42485375
Alignment:
| Q |
16 |
ataggctcattggttatgtactaacaaatgtttaatgttactggtacctgtttgaatggtgtgtagatggaaatggcacacaagaagcctagttaaaatt |
115 |
Q |
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| T |
42485011 |
ataggctcattggttatgtactaacaaatgtttaatgttactggtacctgtttgaatggtgtgtagatggaaatggcacacaagaagcctagttaaaatt |
42485110 |
T |
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| Q |
116 |
ttgattttggggtaaattccaaaactatttctgtctgtagttaagaatgtgtcatgataaattgcattttgagtgacttgggtgatctatggccatgtga |
215 |
Q |
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| T |
42485111 |
ttgattttggggtaaattctaaaactatttctgtctgtagttaagaatgtgtcatgataaattgcattttgagtgacttggatgatctatggccatgtga |
42485210 |
T |
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| Q |
216 |
aagcagcatgtatagtctagttttgaaattgggattcaatgatttagttttaaaatcactggtcttttaggtgaatctcattaaggagtcagaattgaat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
42485211 |
aagcagcatgtatagtctagttttgaaattgggattcaatgatttagttttaaaatc----------------------attaaggagtcaaaattgaat |
42485288 |
T |
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| Q |
316 |
gaaattgcgtaaatattataatatgatctattgcaatcatggaatgtatttcatctattttgttgaggtatggtagcaactagaaat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42485289 |
gaaattgcgtaaatattataatatgatctattgcaatcatggaatggatttcatctattttgttgaggtatggtagcaactagaaat |
42485375 |
T |
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