View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_high_14 (Length: 393)
Name: NF17873_high_14
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 30277945 - 30277700
Alignment:
| Q |
10 |
tcagagaattggattccatgcagatatattgattcctgaggtgtgacacgatcgagtatgtcttagtgcatgcaaatgtgtggttgttattgccaccttg |
109 |
Q |
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| T |
30277945 |
tcagagaattggattccatgcagatatattgattcctgaggtgtgacacgatcgagtatgtcttagtgcatgcaaatgtgtggttgttattgccaccttg |
30277846 |
T |
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| Q |
110 |
tgatatttgtggtcagcaannnnnnnatgtgcggaataaattaagaatgaggtgcagctagctacacaatagtactccactaagagnnnnnnnaatcatc |
209 |
Q |
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| T |
30277845 |
tgatatttgtggtcagcaatttttttatgtgcggaataaattaagaatgaggtgcagctagctacacaatagtactccactaagagtttttttaatcatc |
30277746 |
T |
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| Q |
210 |
ttatagata-taaaatattc-cttatt--taacattaattagttgc |
251 |
Q |
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| T |
30277745 |
ttatagatatttaaatattcttttatttataacattaattagttgc |
30277700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 30277657 - 30277597
Alignment:
| Q |
316 |
ttttttctattaggttttattcatacatagagttagaa-ttagagaccacgtaagtttcttact |
378 |
Q |
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| T |
30277657 |
ttttttctattaggttttattcatacat---gttagaatttagagaccacgtaagtttcttact |
30277597 |
T |
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