View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_high_16 (Length: 390)
Name: NF17873_high_16
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 41697188 - 41697560
Alignment:
| Q |
19 |
tgtgtgtgtgggataaaacaagacttgtattttctgaaaaacttacctgattaatatgtaggtgacgatacatgtttgcatggaagaaaggtgtttctcc |
118 |
Q |
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| T |
41697188 |
tgtgtgtgggggataaaacaagacttgtattttctgaaaaacttacctgattaatatgtaggtgacggtacatgtttgcatggaagaaaggcgtttctcc |
41697287 |
T |
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| Q |
119 |
aacctcgtgaattgaaattcgctttttggatgcagtttcaacattaacaatcctacgagtacttatttcaattaggttataagaatgccccactgaaatt |
218 |
Q |
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| T |
41697288 |
aacctcgtgaattgaaattcgctttttggatgcagtttcaacattaacaatcctacgagtacttatttcaattaggttataagaatgccccactgaaatt |
41697387 |
T |
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| Q |
219 |
tctgatgaacgaatcctctgtcaaaacaagagcataacatattataaacattaaattcataagagttcattaaaattt-aaaaaatgcaaaggctctaaa |
317 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41697388 |
tctgatgaacgaatcctctgttaaaacaagagcataacatattataaacattaaattcataagagttcattaaaatttaaaaaaatgcaaaggctctaaa |
41697487 |
T |
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| Q |
318 |
atcaaacatttatagcatcgtcaatgccagtggcttcaagaatgcctcgcgaaatgaagttgcgcccaatccc |
390 |
Q |
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| T |
41697488 |
atcaaacatttatagcatcgtcaatgccagtggcttcaagaatgcctcgcgaaatgaagttgcgcccaatccc |
41697560 |
T |
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