View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17873_high_18 (Length: 370)
Name: NF17873_high_18
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_18 |
 | |
|
| [»] scaffold0267 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 3835795 - 3836155
Alignment:
| Q |
7 |
aatattgtgggacattgggactagtagcttcattttg------------aagggtcagcagcattttcctatgtcaagtgatacaaagtttgagttccca |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3835795 |
aatattgtgggacattgggactagtagcttcattttgaagggtcatttgaagggtcagcagcattttcctatgtcaagtgatacaaagtttgagttccca |
3835894 |
T |
|
| Q |
95 |
tgtcactatgaagtgtgaacgcccttcattattaatcttccttcccactctcaccttttttcatttctatcgctcatttccttcttcacaaacaaaaccc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
3835895 |
tgtcactatgaagtgtgaacgcccttcattattaatcttcctttccactctcaccttttttcatttcttacgctcatttcgttcttcacaaacaaaaccc |
3835994 |
T |
|
| Q |
195 |
tannnnnnnnnctcgtttccttctctaagaaaatagagtgaactc---nnnnnnnntatatcaattgtgtaatgtctctttcgatacttcttccagaact |
291 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3835995 |
tatttttttttctcgtttccttctctaagaaaatagagtgaactcaaaaaaaaaaaaatatcaattgtgtaatgtctctttcgatacttcttccagaact |
3836094 |
T |
|
| Q |
292 |
catagacgacatcttactgcggcttccgcagaagcctcttgcgagattcaaatgtgtatcc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3836095 |
catagacgacatcttactgcggcttccgcagaagcctcttgcaagattcaaatgtgtatcc |
3836155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 11397 - 11532
Alignment:
| Q |
7 |
aatattgtgggacattgggactagtagcttcattttgaagggtcagcagcattttcctatgtcaagtgatacaaagtttgagttcccatgtcactatgaa |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11397 |
aatattgcgggacattgggactagtagcttcattttgaagggtcagcagcattttcctatgtcaagtgatacaaagtttgagttcccatgtcactatgaa |
11496 |
T |
|
| Q |
107 |
gtgtgaacgcccttcattattaatcttccttcccac |
142 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11497 |
gtgtgaacgcccttcattatttatcttccttcccac |
11532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 11561 - 11664
Alignment:
| Q |
249 |
atatcaattgtgtaatgtctctttcgatacttcttccagaactcatagacgacatcttactgcggcttccgcagaagcctcttgcgagattcaaatgtgt |
348 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11561 |
atatcaattgtgtaatgtctctttcgaaacttcttccagaactcatagacgacatcttactgcggcttccgcagaagcctcttgcgagattcaaatgtgt |
11660 |
T |
|
| Q |
349 |
atcc |
352 |
Q |
| |
|
|||| |
|
|
| T |
11661 |
atcc |
11664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University