View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_high_19 (Length: 358)
Name: NF17873_high_19
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 74 - 348
Target Start/End: Complemental strand, 2288089 - 2287815
Alignment:
| Q |
74 |
gcaaatgattgcagcaacgtctaaagtttgtcctgagaaaaaacatttttcttaaattttctccttaaggatgtaataaaaaatttataaattgataaag |
173 |
Q |
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| T |
2288089 |
gcaaatgattgcagcaacgtctaaagtttgtcctgagaaaaaacatttttcttaaattttctccttaaggatgtaataaaaaatttataaattgataaag |
2287990 |
T |
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| Q |
174 |
tatttttgcgtcgattctaaataatgttatttccttcttatttgtattggataaatattattaaatttatgatttactcttgagagtgaattttgagata |
273 |
Q |
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| T |
2287989 |
tatttttgcgtcgattctaaataatgttatttccttcttatttgtattggataaatattattaaatttatgatttactcttgagagtgaattttgagata |
2287890 |
T |
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| Q |
274 |
cactttatttgtaacaaaggaggtaacgacgccattttttatagtagaattgataacatacattttctcgttcat |
348 |
Q |
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| T |
2287889 |
cactttatttgtaacaaaggaggtaacgaggccattttttatagtagaattgataacatacattttctcgttcat |
2287815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 2288179 - 2288120
Alignment:
| Q |
16 |
ttatgaacgtcgatgtggtatcttatcaacatatggattgaaatactcaagagcttttgc |
75 |
Q |
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| T |
2288179 |
ttatgaacgtcgatgtggtatcttatcaacatatggattgaaatactcaagagcttttgc |
2288120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 470926 - 471007
Alignment:
| Q |
74 |
gcaaatgattgcagcaacgtctaaagtttgtcctgagaaaaaacatttttcttaaattttctccttaaggatgtaataaaaa |
155 |
Q |
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| T |
470926 |
gcaaatgattgcaacaatatctcaagtttgttctgagaaaaaacatttttcataaatttcctcctcaaggatggaacaaaaa |
471007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 470836 - 470888
Alignment:
| Q |
16 |
ttatgaacgtcgatgtggtatcttatcaacatatggattgaaatactcaagag |
68 |
Q |
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| T |
470836 |
ttatgaacgtcattgtggtatcttatcaacacatggaatgaaatactcaagag |
470888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 2262734 - 2262677
Alignment:
| Q |
286 |
aacaaaggaggtaacgacgccatt-----ttttatagtagaattgataacatacattt |
338 |
Q |
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| T |
2262734 |
aacaaaggaggtaacgacgccatttttttttttatagtcgaattgatgacatacattt |
2262677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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