View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_high_24 (Length: 323)
Name: NF17873_high_24
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 2101857 - 2101748
Alignment:
| Q |
11 |
aatattaataacaacgacattagcaacaaacaacatcaaatgaaagaataattaagttctgtaatctactcataatttctgcacactaagaataaacaaa |
110 |
Q |
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| T |
2101857 |
aatattaataacaacgacattagcaacaaacaacatcaaatgaaagaataattaagttctgtaatctactcataatttctgcacactaagaataaacaaa |
2101758 |
T |
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| Q |
111 |
atcccaaatt |
120 |
Q |
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|||||||||| |
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| T |
2101757 |
atcccaaatt |
2101748 |
T |
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Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 2101720 - 2101643
Alignment:
| Q |
143 |
ggataagattgtggcatacttctgataactcctcgagacgaataagaaccctatcagcctgaggcacaacctgcaatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101720 |
ggataagattgtggcatacttctgataactcctcgagacgaataagaaccctatcagcctgaggcacaacctgcaatc |
2101643 |
T |
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