View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_high_29 (Length: 311)
Name: NF17873_high_29
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_29 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 51359542 - 51359845
Alignment:
| Q |
17 |
acttagaaggataggcatcattcttgttagaatctttacttcttctacttgtgttactgtacacaccctccattttattgcttctgtgtctttaggtaga |
116 |
Q |
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| T |
51359542 |
acttagaaggataggcatcattcttgttagaatctttacttcttctacttgtgttactgtacacaccctccattttattgcttctgtgtctttaggtaga |
51359641 |
T |
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| Q |
117 |
gtggctgctttgtctagaaccctgtttttgcacaaaattacatgtgtaagaaatgtataagct---------tgtacctcttcataatcattcatagtgt |
207 |
Q |
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| T |
51359642 |
gtggctgctttgtctagaaccctgtttttgcacaaaattacatgtgtaagaaatgtataagcttgaattgaatgtacctgttcataatcattcatagtgt |
51359741 |
T |
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| Q |
208 |
agtacttcaattgcaacagtttgttgtattgaagaatttgttttaggatttatgtttgataatgtgagtatgagagagaacaaaagttgtcacaaaatgg |
307 |
Q |
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| T |
51359742 |
agtacttcaattgcaacagtttgttgtattgaagaatttgttttaggatttatgtttgataatgtgagtatgagagagaacaaaagttgtcacaaaatgg |
51359841 |
T |
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| Q |
308 |
ttgt |
311 |
Q |
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|||| |
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| T |
51359842 |
ttgt |
51359845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 51349765 - 51349894
Alignment:
| Q |
35 |
cattcttgttagaatctttacttcttctacttgtgttactgtacacaccctccattttattgcttctgtgtcttta---ggtagagtggctgctttgtct |
131 |
Q |
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| T |
51349765 |
cattcttgttagaatctttactttttctacttgtgtaactgtgcacactttccattttcttgcttctgtgccttcatgtagtagaatggcagctttgtct |
51349864 |
T |
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| Q |
132 |
agaaccctgtttttgcacaaaattacatgt |
161 |
Q |
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| T |
51349865 |
agaacactgtttgtgcacaaagttgcatgt |
51349894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 43169756 - 43169797
Alignment:
| Q |
266 |
ataatgtgagtatgagagagaacaaaagttgtcacaaaatggttgt |
311 |
Q |
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| T |
43169756 |
ataatgtgagtatgagaga----aaaagttgtcacaaaatggttgt |
43169797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 40596057 - 40596098
Alignment:
| Q |
266 |
ataatgtgagtatgagagagaacaaaagttgtcacaaaatggttgt |
311 |
Q |
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| T |
40596057 |
ataatgtgagtatgagagag----aaagttgtcacaaaatggttgt |
40596098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 41507197 - 41507238
Alignment:
| Q |
266 |
ataatgtgagtatgagagagaacaaaagttgtcacaaaatggttgt |
311 |
Q |
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| T |
41507197 |
ataatgtgagtatgagagag----aaagttgtcacaaaatggttgt |
41507238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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