View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_high_42 (Length: 212)
Name: NF17873_high_42
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 51360050 - 51359872
Alignment:
| Q |
9 |
aattattcttgcaggtgttggttgtcacagttaagaattggagtgtgaaagtacctgataattctgaagagttgtatgaaatagagactcataagtctac |
108 |
Q |
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| T |
51360050 |
aattattcttgcaggtgttggttgtcacagttaagaattggagtgtgaaagtacctgataattctgaagagttgtatgaaatagagactcataagtctac |
51359951 |
T |
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| Q |
109 |
tttaaagaacaaactcattcctcacactagccaattcaggttggagtaattttagttatatttctatgatttcctttaagt |
189 |
Q |
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| T |
51359950 |
tttaaagaacaaactcattcctcacactagccaattcaggttggagtaattttagt--tatttctatgattttctttaagt |
51359872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 51350552 - 51350503
Alignment:
| Q |
9 |
aattattcttgcaggtgttggttgtcacagttaagaattggagtgtgaaa |
58 |
Q |
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|||| |||||| ||||| ||||||||||||| ||||||||||| |||||| |
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| T |
51350552 |
aattgttcttgaaggtgctggttgtcacagtcaagaattggagggtgaaa |
51350503 |
T |
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