View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17873_high_6 (Length: 484)

Name: NF17873_high_6
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17873_high_6
NF17873_high_6
[»] chr8 (4 HSPs)
chr8 (70-225)||(3390175-3390330)
chr8 (333-467)||(3390684-3390815)
chr8 (53-117)||(34162632-34162696)
chr8 (350-467)||(3365005-3365122)
[»] chr2 (4 HSPs)
chr2 (35-191)||(38431869-38432027)
chr2 (50-172)||(9397641-9397764)
chr2 (50-115)||(9397371-9397436)
chr2 (72-139)||(8184989-8185056)
[»] chr1 (2 HSPs)
chr1 (68-191)||(24563965-24564089)
chr1 (50-118)||(27829190-27829258)
[»] chr7 (4 HSPs)
chr7 (50-118)||(29361468-29361536)
chr7 (50-112)||(38014383-38014445)
chr7 (50-118)||(5560554-5560622)
chr7 (53-191)||(29139876-29140007)
[»] chr4 (3 HSPs)
chr4 (50-191)||(28721956-28722097)
chr4 (50-116)||(45571587-45571653)
chr4 (52-116)||(23247185-23247249)
[»] chr5 (3 HSPs)
chr5 (58-139)||(8482028-8482110)
chr5 (54-118)||(32251250-32251314)
chr5 (58-115)||(8472863-8472917)
[»] chr3 (1 HSPs)
chr3 (42-82)||(11341386-11341426)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 70 - 225
Target Start/End: Original strand, 3390175 - 3390330
Alignment:
Q  70 ttgttaagagttgttacttcggatattcttagaaagtctttaaatagcctgaaagggtagaagggaaagacagttatgaataattaagtttagcgactag 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3390175 ttgttaagagttgttacttcggatattcttagaaagtctttaaatagcctgaaagggtagaagggaaagacagttatgaataattaagtttagcgactag 3390274  T
Q  170 agaatgctatagagtgaaaggaaggttatcatctttattgtatatcttttgaatct 225  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3390275 agaatgctatagagtgaaaggaaggttatcatctttattgtataccttttgaatct 3390330  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 333 - 467
Target Start/End: Original strand, 3390684 - 3390815
Alignment:
Q  333 tagttacctaatacttgttagattgtagttatatactaaaactacttaaaaaacaattgatgaacaagttattagtattgtgtagtaagaagatcctata 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||  ||    
T  3390684 tagttacctaatacttgttagattgtagttatatactaaaactacttaaaaaacaattgttgaactagttattaatattgtgcagtaagaagatcc--ta 3390781  T
Q  433 tatatccttcatatcaacaaaaatataattttatt 467  Q
    |||||||||||||||||| ||||||||||||||||    
T  3390782 tatatccttcatatcaac-aaaatataattttatt 3390815  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 34162696 - 34162632
Alignment:
Q  53 ataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatagc 117  Q
    |||||||||||| | |||||||||||||||||| || || ||| ||||||||||||| |||||||    
T  34162696 ataagtttgttatgtggttgttaagagttgttattttggttatgcttagaaagtcttcaaatagc 34162632  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 467
Target Start/End: Complemental strand, 3365122 - 3365005
Alignment:
Q  350 ttagattgtagttatatactaaaactac-ttaaaaaacaattgatgaacaagttattagtattgtgtagtaagaagatcctatatatatccttcatatca 448  Q
    ||||||||||||||| ||||||||  |  ||| |||||||||| ||| | ||  ||| || |||| | |||||||||||| ||||| | | |||| ||||    
T  3365122 ttagattgtagttatgtactaaaaaaaaattataaaacaattgttgagctagagatttgttttgtatggtaagaagatccaatata-accattcagatca 3365024  T
Q  449 acaaaaatataattttatt 467  Q
    |||||||||||||||||||    
T  3365023 acaaaaatataattttatt 3365005  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 35 - 191
Target Start/End: Original strand, 38431869 - 38432027
Alignment:
Q  35 agttagtttagaaaattgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatagcctgaaagggtagaaggg 134  Q
    |||||||||||  | ||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||| | ||||||   |||||||||| ||    
T  38431869 agttagtttagttagttgataagtttgttaggtggttgttaagagttgttagtttggttattcttagaaagtcttcacatagccctcaagggtagaaagg 38431968  T
Q  135 aaagacag--ttatgaataattaagtttagcgactagagaatgctatagagtgaaagga 191  Q
    ||||  ||  || ||||||||||||| ||| |||||||||||||| ||| |||||||||    
T  38431969 aaagttagttttttgaataattaagtatagtgactagagaatgctctagtgtgaaagga 38432027  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 9397641 - 9397764
Alignment:
Q  50 ttgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatagcctgaaagggtagaagggaaagacag-ttatga 148  Q
    ||||||||||||||||  ||||||||||| |||||| || || ||||||||| |||| |||||||||||   ||||||||| |||||||| || || |||    
T  9397641 ttgataagtttgttagttggttgttaagacttgttattttggttattcttagcaagtttttaaatagccctcaagggtagaggggaaagatagtttttga 9397740  T
Q  149 ataattaagtttagcgactagaga 172  Q
    |||||||| ||||| |||||||||    
T  9397741 ataattaaatttagtgactagaga 9397764  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 9397371 - 9397436
Alignment:
Q  50 ttgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaata 115  Q
    ||||||||||||||||| |||||||||||| ||||| ||  | ||||| |||||||||||||||||    
T  9397371 ttgataagtttgttaggtggttgttaagagctgttattttagttattcctagaaagtctttaaata 9397436  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 8184989 - 8185056
Alignment:
Q  72 gttaagagttgttacttcggatattcttagaaagtctttaaatagcctgaaagggtagaagggaaaga 139  Q
    |||||||||||||| || |  ||| ||||||||||||||||||||||  ||||| |||| ||||||||    
T  8184989 gttaagagttgttattttgcttatccttagaaagtctttaaatagccctaaaggatagaggggaaaga 8185056  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 24564089 - 24563965
Alignment:
Q  68 ggttgttaagagttgttacttcggatattcttagaaagtctttaaatagcctgaaagggtagaagggaaagacagttat-gaataattaagtttagcgac 166  Q
    |||| |||| |||||||| || || |||||||| || ||||||||||||||   | ||||||| |||||||| |||| | |||||||||||||||| ||     
T  24564089 ggtttttaaaagttgttattttggttattcttataatgtctttaaatagccctcatgggtagaggggaaagatagtttttgaataattaagtttagtgat 24563990  T
Q  167 tagagaatgctatagagtgaaagga 191  Q
    ||||||||||||||| |||||||||    
T  24563989 tagagaatgctatagtgtgaaagga 24563965  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 27829258 - 27829190
Alignment:
Q  50 ttgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatagcc 118  Q
    ||||||||||||||||| |||| ||||||| ||||| || || ||| ||| ||||||||||||||||||    
T  27829258 ttgataagtttgttaggtggttattaagagatgttattttggttatccttggaaagtctttaaatagcc 27829190  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 29361468 - 29361536
Alignment:
Q  50 ttgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatagcc 118  Q
    ||||||| ||||||||| |||||||||||||||||| || || ||||||||| ||||||||||||||||    
T  29361468 ttgataaatttgttaggtggttgttaagagttgttattttggttattcttaggaagtctttaaatagcc 29361536  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 38014383 - 38014445
Alignment:
Q  50 ttgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaa 112  Q
    ||||||||||||||||| ||||||||| |||||||| || || ||||||||||||||||||||    
T  38014383 ttgataagtttgttaggtggttgttaaaagttgttattttggttattcttagaaagtctttaa 38014445  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 5560622 - 5560554
Alignment:
Q  50 ttgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatagcc 118  Q
    ||||||||||||||||| ||||||||  |||||||| || || |||||||| |||||||||||||||||    
T  5560622 ttgataagtttgttaggtggttgttagaagttgttattttggttattcttataaagtctttaaatagcc 5560554  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 29140007 - 29139876
Alignment:
Q  53 ataagtttgttagggggttgtt-aagagttgttacttcggatattcttagaaagtctttaaatagcctgaaagggtagaagggaaagacagttatgaata 151  Q
    |||||||||||||| ||||||| |||||||||||||| |  |||||||| ||||| |||||||||||        |||||||| |||| |||| ||||||    
T  29140007 ataagtttgttaggtggttgttgaagagttgttactttgattattcttataaagtatttaaatagcc-------ctagaaggg-aagatagttttgaata 29139916  T
Q  152 attaagtttagcgactagagaatgctatagagtgaaagga 191  Q
    ||| || |||| |||||||||||||| | | |||||||||    
T  29139915 attcagattagtgactagagaatgctctggtgtgaaagga 29139876  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 28722097 - 28721956
Alignment:
Q  50 ttgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatag-cctgaaagggtagaagggaaagacagttatga 148  Q
    ||||||||| ||||||| | || ||||||||||||| || || |||||||||||||||||||||||| |||  |  | ||| ||||||||| || | |||    
T  28722097 ttgataagtatgttaggtgatttttaagagttgttattttggttattcttagaaagtctttaaatagtcctcgattgatag-agggaaagatagctttga 28721999  T
Q  149 ataattaagtttagcgactagagaatgctatagagtgaaagga 191  Q
    |||||||| ||||| | || ||||||||| ||| |||||||||    
T  28721998 ataattaaatttagtgcctcgagaatgctctagtgtgaaagga 28721956  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 45571653 - 45571587
Alignment:
Q  50 ttgataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatag 116  Q
    ||||||||||||||||| |||| ||||||||||||| || || ||||||| | ||||||||||||||    
T  45571653 ttgataagtttgttaggtggttcttaagagttgttattttggttattcttgggaagtctttaaatag 45571587  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 23247185 - 23247249
Alignment:
Q  52 gataagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatag 116  Q
    |||||| |||||||| |||||||||| || |||| || || |||||||| |||||||||||||||    
T  23247185 gataagcttgttaggtggttgttaagggtagttattttggttattcttaaaaagtctttaaatag 23247249  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 8482028 - 8482110
Alignment:
Q  58 tttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaata-gcctgaaagggtagaagggaaaga 139  Q
    ||||||||| ||||||||||| |||||| || |||||||| |||||||||||||||||  ||| ||  |||||||||||||||    
T  8482028 tttgttaggtggttgttaagatttgttattttggatattcatagaaagtctttaaatacccctcaattggtagaagggaaaga 8482110  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 32251314 - 32251250
Alignment:
Q  54 taagtttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaatagcc 118  Q
    ||||||| ||||| |  ||||||||||||||| || || |||| |||||||||||||||||||||    
T  32251314 taagttttttaggtgactgttaagagttgttattttggttattgttagaaagtctttaaatagcc 32251250  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 8472863 - 8472917
Alignment:
Q  58 tttgttagggggttgttaagagttgttacttcggatattcttagaaagtctttaaata 115  Q
    ||||||||| ||||||||||||||||   || || |||||||||||||||||||||||    
T  8472863 tttgttaggtggttgttaagagttgt---tttggttattcttagaaagtctttaaata 8472917  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 11341386 - 11341426
Alignment:
Q  42 ttagaaaattgataagtttgttagggggttgttaagagttg 82  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  11341386 ttagtaaattgataagtttgttacgtggttgttaagagttg 11341426  T

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