View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_high_7 (Length: 444)
Name: NF17873_high_7
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 5710429 - 5710811
Alignment:
| Q |
19 |
gaactcacaagaatgaggtaatgaactaactaaatcctatgtttatgcattgcagcatctatttttgtttactctttgaatgtgattttggaaaatcgta |
118 |
Q |
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| T |
5710429 |
gaactcacaagaatgaggtaatgaactaactaaatcctatgtttatgcattgcagcatctatttttgtttactctttgaatgtgattttggaaaatcgta |
5710528 |
T |
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| Q |
119 |
ttttttagatatgcttatccttggtggaaggaaaaagtcataaattccgaacttaagaggaaagacggtttatgtccgttaacacctgaggaaactgctc |
218 |
Q |
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| T |
5710529 |
ttttttagatatgcttatccttggtggaaggaaaaagtcataaattccgaacttaagaggaaagacggtttatgtcctttaacacctgaggaaactgctc |
5710628 |
T |
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| Q |
219 |
taatactgaaagcactagacatagatcaaaatattcaaatttatattgctgctggagaaatattcggtggaaagagaagaatggcacgtttacgagctac |
318 |
Q |
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| T |
5710629 |
taatactgaaagcactagatatagatcaaaatattcaaatttatattgctgctggagaaatattcggtggaaagagaagaatggcacgtttacgagctac |
5710728 |
T |
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| Q |
319 |
ttatcctaacttggtcggtacaaagaagcaaaatcatatatgtgtctgtctgtttatctatttgtgcgtgtttgtttgtaacc |
401 |
Q |
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| T |
5710729 |
ttatcctaacttggtcggtacaaagaagcaaaatcatatatgtgcctgtctgtttatctatttgtgtgtgtttgtttgtaacc |
5710811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 24494892 - 24494801
Alignment:
| Q |
125 |
agatatgcttatccttggtggaaggaaaaagtcataaattccgaacttaagaggaaagacggtttatgtccgttaacacctgaggaaactgc |
216 |
Q |
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| T |
24494892 |
agatatgcttatccttggtggaaagaaaaaataattaattctgatttgaaaagaaaagatggtttatgtccgttaacacccgaggagactgc |
24494801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 298
Target Start/End: Original strand, 45807175 - 45807348
Alignment:
| Q |
125 |
agatatgcttatccttggtggaaggaaaaagtcataaattccgaacttaagaggaaagacggtttatgtccgttaacacctgaggaaactgctctaatac |
224 |
Q |
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| T |
45807175 |
agatatgcctatccttggtggaaagagaaaataattaattctgacttgaaaagaagagatggtttatgtcctctaacacccgaggagactgcccttacac |
45807274 |
T |
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| Q |
225 |
tgaaagcactagacatagatcaaaatattcaaatttatattgctgctggagaaatattcggtggaaagagaaga |
298 |
Q |
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| T |
45807275 |
taagggctcttgacattgatcaaaacattcaaatctacattgcagctggtgaaatatatggtggagaaagaaga |
45807348 |
T |
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