View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_12 (Length: 418)
Name: NF17873_low_12
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 40056833 - 40057227
Alignment:
| Q |
1 |
ggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaactataggagatcttggtgtcattttcataaatcttagaggaagtg |
100 |
Q |
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| T |
40056833 |
ggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagtttttaaactataggagatcttggtgtcattttcataaatcttagaggaagtg |
40056932 |
T |
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| Q |
101 |
aatgcaannnnnnnctgaaataaaaatttccaacagagttaactgttgttggttgtcggcggctgtagttaactgtcgtataggacttaatnnnnnnnnt |
200 |
Q |
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| T |
40056933 |
aatgcaatttttt-ctgaaataaaaatttccaacagagttaactgttgttggttgtcggcgtttgtagttaactgtcgtagaggacttagtaaaaaaaaa |
40057031 |
T |
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| Q |
201 |
t-gtcgtttgaggtgttttggtcttttcagatgatttggagaaaaaatgaaagcgtaaagagtaatttttcaacctattgaccacattacgtagcacagt |
299 |
Q |
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| T |
40057032 |
tagccatttgaggtgttttggtcttttcagatgatttggagaaaaaatgagagcgtaaagagtaatttttcaacctattgacc-----acgtagcacagt |
40057126 |
T |
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| Q |
300 |
tcaagcccaaacaaaatatttatcatttgttagtannnnnnnnnnnnnngtggtggccggggtttgaatctgtcagtaattctgaatatatttatctata |
399 |
Q |
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| T |
40057127 |
tcaagcccaaacaaaatatttatcatttgttagta-----attttttttgtggtggccggggtttgaatctatcagtaattctgaatatatttatctata |
40057221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 41714166 - 41714118
Alignment:
| Q |
31 |
aaggagataagtgtaagttttaaaactataggagatcttggtgtcattt |
79 |
Q |
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| T |
41714166 |
aaggaggttagtgtaagttttaaaattagaggagatgttggtgtcattt |
41714118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39484442 - 39484360
Alignment:
| Q |
1 |
ggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaactataggagatcttggtgtcattttcat |
83 |
Q |
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| T |
39484442 |
ggatgtgtttatatatttcatgagaacttgagggaggtaagtgtaagttttaaaattagtggggatattggtgtcattttcat |
39484360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35145678 - 35145621
Alignment:
| Q |
1 |
ggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaacta |
58 |
Q |
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| T |
35145678 |
ggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaacta |
35145621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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