View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_13 (Length: 395)
Name: NF17873_low_13
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 8930039 - 8930406
Alignment:
| Q |
10 |
tagcatagggaaattaaataattagaaagaagcagaaaaagtagggcggtttaaggtttgtaactaaactaagtatattagataatagtattaatattca |
109 |
Q |
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| T |
8930039 |
tagcatagggaaattaaataattagaaagaagcagaaaaagtagggcggtttaaggtttgtaactaaactaagtatattagataatagtattaatattca |
8930138 |
T |
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| Q |
110 |
ctctgatttataaaatttgtatggagaatttcaacttt-gtcataatattcttgattaggaccacaaatacaacttcaccaatctgtgtcgaataatgaa |
208 |
Q |
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| T |
8930139 |
ctctgatttataaaatttgtatggagaatttcaactttagtcataatattcttgattaggaccacaaatacaacttcaccaatctgtgtcgaataatgaa |
8930238 |
T |
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| Q |
209 |
tggctaatgtaaaacaacaaaacaaattttcatcatgttacataatctagtggtgttaaactgaaacaagtttgtgttgtataagattcatgtgcattct |
308 |
Q |
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| T |
8930239 |
tggctaatgtaaaacaacaaaacaaattttcatcatgttacaaaatctattggtgttaaactgaaacaagtttgtgttgtataagattcatgtgcattct |
8930338 |
T |
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| Q |
309 |
cagcctccagactcattacacatgaacagtccgatacattaaagtttttgcatatgcagagtccggaa |
376 |
Q |
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| T |
8930339 |
cagcctccagactcattacacatgaacagtccgatacattaaagtttttgcgtatgcagagtccggaa |
8930406 |
T |
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