View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_15 (Length: 392)
Name: NF17873_low_15
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 43395470 - 43395833
Alignment:
| Q |
10 |
tcatcaaaacaaaaggaaataaaatttaattattagtaaatgtttagtttcatgcataaagaatctggtcgaaatacatattagaatctagatattaacc |
109 |
Q |
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| T |
43395470 |
tcatcaaaacataagaaaataaaatttaattattagtaaatgtttagtttcatgcataaagaatctggtcgaaatacatattagaatctagatattaacc |
43395569 |
T |
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| Q |
110 |
tctaatatcattattttattttgcgaatgtacgggtctttttactagttaaaattagaaatcagcttaattgttcatgtcaatatttcagtgcacaatta |
209 |
Q |
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| T |
43395570 |
tctaatatcattat-----tttgcgaatgtaagggtctttttactagttaaaattagaaatcagcttaattgttcatgtcaatatttcagtgcacaatta |
43395664 |
T |
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| Q |
210 |
actttttgtaaccaagatgaaagtgaaaaagccttaaacaagtttcattgtataatctgatgcagatacagaacagcagaaggaatcagtgatgagatac |
309 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395665 |
actttttgtaaccaagatcaaagtgaaaaacccttaaacaagtttcattgtataatctgatgcagatacagaacagcagaaggaatcagtgatgagatac |
43395764 |
T |
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| Q |
310 |
tatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatg |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395765 |
tatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatg |
43395833 |
T |
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