View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_17 (Length: 376)
Name: NF17873_low_17
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 6953781 - 6954133
Alignment:
| Q |
1 |
acaatttcagcatatttgatagcatcttgtttagtgccaacttttggatttaaaaacaagggtttgttcatgcgagtcaaatcaaaatcaagatgcaatg |
100 |
Q |
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| T |
6953781 |
acaatttcagcatatttgatagcatcttgtttagtgccaacttttggatttaaaaacaagggtttgttcatgcgagtccaatcaaaatcaagatgcaacg |
6953880 |
T |
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| Q |
101 |
cattcttccataaatttaaccatctattagataaaatgcttgttctaaaaacatcatcaatagaaagataagatattatgcaatgttaaatatcatctga |
200 |
Q |
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| T |
6953881 |
cattcttccataaatttaaccatctattagataaaatgcttgttctaaaaacatcatcaatagaaagataagatattatgcaatgttaaatatcatctga |
6953980 |
T |
|
| Q |
201 |
taacacacttaactatcatgtctttctccatatgattgttacnnnnnnnnnnnnnnnnnnnnccccttaatgtaaaaatagttttcatctttcccttcaa |
300 |
Q |
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| T |
6953981 |
taacacact----tatcatgtctttctccatatgattgttac-----ttttttctttcggatcccgttaatgtaaaaatagttttcatctttcccttcaa |
6954071 |
T |
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| Q |
301 |
agaaagcatagttttcttgtaactcgttacttcccaaatagttttcttcctgtttctcaata |
362 |
Q |
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| T |
6954072 |
agaaagcatagttttcttgtaactcgttaattcccaaatagttttcttcctgtttctcaata |
6954133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 29147180 - 29147041
Alignment:
| Q |
58 |
aagggtttgttcatgcgagtcaaatcaaaatcaagatgcaatgcattcttccataaatttaaccatctattagataaaatgcttgttctaaaaacatcat |
157 |
Q |
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| T |
29147180 |
aagggttttatcatgtgtgtgaaatcaaaatcaaggtgcattgcattcttccacaaatgtatccacctctttgataaaatacttgttcttaaagcttcat |
29147081 |
T |
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| Q |
158 |
caatagaaagataagatattatgcaatgttaaatatcatc |
197 |
Q |
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| T |
29147080 |
caatggaaagataagagattaagcgatgcaaaatatcatc |
29147041 |
T |
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