View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_2 (Length: 580)
Name: NF17873_low_2
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_2 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 570
Target Start/End: Original strand, 4068 - 4615
Alignment:
| Q |
17 |
agaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4068 |
agaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtg |
4167 |
T |
|
| Q |
117 |
attcttaattaacacttatatggaatgactaaaagtctaaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
4168 |
attcttaattaacacttatatggaatgactaaaa--------tgacatctccttcagaggaagaatacaccccgtctgtcaacctatatggaatatcagt |
4259 |
T |
|
| Q |
215 |
gctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattatt |
314 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260 |
gctcaatgctcgtctagctggtcctgcatgaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattatt |
4359 |
T |
|
| Q |
315 |
aatcaaaatgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccg |
414 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4360 |
aatcaaaatgctttgacgtgatgattattgtatagacattttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccg |
4459 |
T |
|
| Q |
415 |
tgctgtctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaag |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
4460 |
tgctgtctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaataaaattgattcagtacaagtacaag |
4559 |
T |
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| Q |
515 |
ccaaacatgaacagaaaagagagacacataaagcatttgataagaataggcctttg |
570 |
Q |
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| T |
4560 |
ccaaacatgaacagaaaagagagacacataaagcatttgataagaataggcctttg |
4615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 570
Target Start/End: Original strand, 3896403 - 3896961
Alignment:
| Q |
17 |
agaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3896403 |
agaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaaaatggacctaatgagggtg |
3896502 |
T |
|
| Q |
117 |
attcttaattaacacttatatggaatgactaaaa-gtc--taaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatc |
211 |
Q |
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|||||||| ||| ||||||||||||||||||||| | | | | | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3896503 |
attcttaaataatacttatatggaatgactaaaatgacattcatagcacatctccttcagaggaagaatacaccccgtccgtcaacctatatggaatatc |
3896602 |
T |
|
| Q |
212 |
agtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
3896603 |
agtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaactttggataatattataaagagatcaatgatt |
3896702 |
T |
|
| Q |
312 |
attaatcaaaatgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaa |
411 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3896703 |
attaatcaaaatgctttgacgtgatgattattgtatagacattttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaa |
3896802 |
T |
|
| Q |
412 |
ccgtgctgtctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtac |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3896803 |
ccgtgctgtctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtac |
3896902 |
T |
|
| Q |
512 |
aagccaaacatgaacagaaaagagagacacataaagcatttgataagaataggcctttg |
570 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3896903 |
aagccaaacatgaacagaaaagagagacacataaagcatttgataagaataggtctttg |
3896961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 331
Target Start/End: Complemental strand, 46285347 - 46285233
Alignment:
| Q |
217 |
tcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatatta--taaagagaccaatgattatt |
314 |
Q |
| |
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|||| |||| ||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||| ||||||| | ||||||||||||||||| |
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| T |
46285347 |
tcaaggctcatctagctggtcctgc-agaatccaaatatagc-ttaactcagattatgatcaatttggagcaatattaggaagagagaccaatgattatt |
46285250 |
T |
|
| Q |
315 |
aatcaaaatgctttgac |
331 |
Q |
| |
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||| ||||||||||||| |
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| T |
46285249 |
aattaaaatgctttgac |
46285233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 350 - 503
Target Start/End: Complemental strand, 46285194 - 46285038
Alignment:
| Q |
350 |
acattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg--- |
446 |
Q |
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|||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || |
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| T |
46285194 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtcc |
46285095 |
T |
|
| Q |
447 |
agctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
503 |
Q |
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|| ||| | |||||| || |||||||||| | ||||||||||| |||| |||||| |
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| T |
46285094 |
agttcagcaattgcttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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