View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_21 (Length: 334)
Name: NF17873_low_21
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 18950562 - 18950253
Alignment:
| Q |
6 |
agtgagaagaaattaaatacagatnnnnnnntacatcaaatctttataagatcctctcaaaaaataaaaccttattagtttgttacacttgacgctcggt |
105 |
Q |
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| T |
18950562 |
agtgaaaaaaaattaaatacagataaaaaaatacatcaaatctt-attagatcctctcaaaaaataaaaccttattagtttgttacacttcatgctcgtt |
18950464 |
T |
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| Q |
106 |
aatatataaactaaccctaatctaactttttctcactcaaaacctaaactttactataaaactattctttttctaagctcatcgcacatcaaagtgccgt |
205 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18950463 |
aatatataaactaaacctaatctaactttttctcactcaaaacctaaacgttactataacactattctttttctaagctcatcgcacatcaaagtgccgt |
18950364 |
T |
|
| Q |
206 |
agagttttctttctttttcagaattccaatcaagctacgatcatgacaaaaacgtgcttgctgagtgaagagttatcaaaaccaatcattgtccgtgaag |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18950363 |
agagttttctttctttttcagaattccaatcaagctacgatcatgacaaaaacgtgcatgctgagtgaagagttatcaaaaccaatcattgtccgtgaag |
18950264 |
T |
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| Q |
306 |
tttgggcacat |
316 |
Q |
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||||||||||| |
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| T |
18950263 |
tttgggcacat |
18950253 |
T |
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