View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17873_low_23 (Length: 327)

Name: NF17873_low_23
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17873_low_23
NF17873_low_23
[»] chr7 (2 HSPs)
chr7 (14-246)||(45675691-45675923)
chr7 (270-311)||(45675933-45675974)
[»] chr1 (4 HSPs)
chr1 (59-194)||(37963053-37963188)
chr1 (128-166)||(16138163-16138201)
chr1 (83-192)||(51044663-51044772)
chr1 (134-166)||(16127079-16127111)
[»] chr4 (1 HSPs)
chr4 (135-178)||(53557711-53557754)
[»] chr3 (3 HSPs)
chr3 (138-169)||(20740369-20740400)
chr3 (138-168)||(20732633-20732663)
chr3 (83-192)||(34626408-34626517)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 45675691 - 45675923
Alignment:
Q  14 agaggttttttgaatctgaatatttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45675691 agaggttttttgaatctgaatatttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttt 45675790  T
Q  114 ttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaaagt 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675791 ttcagacttgaattccatagattttttatctcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaaagt 45675890  T
Q  214 atattagtcattgtcgcttcgattcgtagaaag 246  Q
    |||||||||||||||||||||||||||||||||    
T  45675891 atattagtcattgtcgcttcgattcgtagaaag 45675923  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 45675933 - 45675974
Alignment:
Q  270 aaaataatcttgatgacttaattaaaagccaaatctaaatgc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45675933 aaaataatcttgatgacttaattaaaagccaaatctaaatgc 45675974  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 37963188 - 37963053
Alignment:
Q  59 ctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttctt 158  Q
    |||||||| ||||| |||||||||||||||||| ||  ||||  | | | ||||||| |||| |||||||||||||||||| || |||||||| ||||||    
T  37963188 ctcagagagtggtttgtgtgtgtttggatcaatgccactttgtctcaacctcttcttgagacatgaattccatagatttttaatctcattgtcagttctt 37963089  T
Q  159 ccaggtaactgagctgcaatctgcgaccacctgata 194  Q
    || ||||| || ||||||||||| ||||| ||||||    
T  37963088 cctggtaattgtgctgcaatctgagaccatctgata 37963053  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 16138163 - 16138201
Alignment:
Q  128 ccatagattttttatttcattgtctgttcttccaggtaa 166  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16138163 ccatacattttttatttcattgtctgttcttccaggtaa 16138201  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 51044772 - 51044663
Alignment:
Q  83 tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc 182  Q
    ||||||||| |||| || | |||| |||||||||| |||||||||||| |  |||||||| ||||| |||||||| || ||||| || | |||||| ||     
T  51044772 tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttga 51044673  T
Q  183 gaccacctga 192  Q
    | ||||||||    
T  51044672 gcccacctga 51044663  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 16127079 - 16127111
Alignment:
Q  134 attttttatttcattgtctgttcttccaggtaa 166  Q
    |||||||||||||||||||||||||||||||||    
T  16127079 attttttatttcattgtctgttcttccaggtaa 16127111  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 53557754 - 53557711
Alignment:
Q  135 ttttttatttcattgtctgttcttccaggtaactgagctgcaat 178  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  53557754 ttttttatgtcattgtctgttcttccaggtaactgagcagcaat 53557711  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 169
Target Start/End: Original strand, 20740369 - 20740400
Alignment:
Q  138 tttatttcattgtctgttcttccaggtaactg 169  Q
    ||||||||||||||||||||||||||||||||    
T  20740369 tttatttcattgtctgttcttccaggtaactg 20740400  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 20732633 - 20732663
Alignment:
Q  138 tttatttcattgtctgttcttccaggtaact 168  Q
    |||||||||||||||||||||||||||||||    
T  20732633 tttatttcattgtctgttcttccaggtaact 20732663  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 34626408 - 34626517
Alignment:
Q  83 tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc 182  Q
    ||||||||| |||| || | |||| |||||||||| |||||||||||| |  ||||| || ||||| || ||||| || ||||| || |||||||| ||     
T  34626408 tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttga 34626507  T
Q  183 gaccacctga 192  Q
    | ||||||||    
T  34626508 gcccacctga 34626517  T

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