View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_26 (Length: 317)
Name: NF17873_low_26
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_26 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 3565701 - 3566002
Alignment:
| Q |
1 |
caattctcatcctttgaccacatctttaagaacttgaaggatgagttgaaaagaacctccgttgttttaaattccagaagaaggggatgatagtggtcag |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3565701 |
caattctcatccattgaccacatctttaagaacttgaaggatgagttgaaaagaatctccgttgttttaaattccagaagaaggggatgatagtgctcag |
3565800 |
T |
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| Q |
101 |
aggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaaccaatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565801 |
aggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaaccaatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttca |
3565900 |
T |
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| Q |
201 |
tccctctcttccatttttccatgtaaaaagcgcgccctttgttggtaaatgtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagtt |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565901 |
tccctatcttccatttttccatgtaaaaagcgcgccctttgttggtaaatgtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagtt |
3566000 |
T |
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| Q |
301 |
ct |
302 |
Q |
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|| |
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| T |
3566001 |
ct |
3566002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 139782 - 140080
Alignment:
| Q |
1 |
caattctcatcctttgaccacatctttaagaacttgaaggatgagttgaaaagaacctccgttgttttaaattccagaagaaggggatgatagtggtcag |
100 |
Q |
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|||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
139782 |
caattctcatgcattgaccacatctttaagaacttaaaggatgaggtgaaaagaacctctgttgttttaaattccagaagaaggggat---agtggtcag |
139878 |
T |
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| Q |
101 |
aggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaaccaatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcg |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
139879 |
aggtgagccttattaaagttgaacaagatgttgtgctacatgcatctaaccaatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttct |
139978 |
T |
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| Q |
201 |
tccctctcttccatttttccatgtaaaaagcgcgccctttgttggtaaatgtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagtt |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
139979 |
tccctttcttccatttttccatgtaaaaagcgcgccctttgttggtaaatgtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagtt |
140078 |
T |
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