View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_27 (Length: 316)
Name: NF17873_low_27
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 140 - 300
Target Start/End: Complemental strand, 29234591 - 29234431
Alignment:
| Q |
140 |
cagcctttgctcctttgtaattcccagtcacatacccaattgaatgctgcattatttcattttcaacaatatcataaggtttaatttggagaacaattaa |
239 |
Q |
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| T |
29234591 |
cagcctttgctcctttgtaattcccagtcacataccctattgaatgctgcattatttcattttcaacaatatcataaggtttaatttggagaacaattaa |
29234492 |
T |
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| Q |
240 |
atctaatattggtttgtggttaagtttcttgttttagaagataaaaatagtcagagcaaag |
300 |
Q |
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| T |
29234491 |
atctaatattggtttgtggttaagtttcttgttttagaagataaaaatagtcagagcaaag |
29234431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 29234745 - 29234616
Alignment:
| Q |
12 |
atgaatggattaactaatgagaataatatttagcatgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatcagataaaatccatattt |
111 |
Q |
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| T |
29234745 |
atgaatggattaactaatgagaataatatttagcatgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatcagataaaatccatattt |
29234646 |
T |
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| Q |
112 |
gagccaagctgaattctccttcgatctcca |
141 |
Q |
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| T |
29234645 |
gagccaagctgaattctccttcgatctcca |
29234616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 29254490 - 29254408
Alignment:
| Q |
45 |
catgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatcagataaaatccatatttgagccaagctgaattc |
127 |
Q |
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| T |
29254490 |
catgcctgccaaccagcttcaatggtgttcatgtcttttccaaatgtaccagagacgatccacatttgtgccaagcttaattc |
29254408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 14496575 - 14496655
Alignment:
| Q |
47 |
tgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatcagataaaatccatatttgagccaagctgaattc |
127 |
Q |
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| T |
14496575 |
tgcctgccaaccagcttcaatggtgttaagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattc |
14496655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 30918796 - 30918824
Alignment:
| Q |
45 |
catgcctgccaaccagcttcaatggtgtt |
73 |
Q |
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| T |
30918796 |
catgcctgccaaccagcttcaatggtgtt |
30918824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 30928629 - 30928657
Alignment:
| Q |
45 |
catgcctgccaaccagcttcaatggtgtt |
73 |
Q |
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| T |
30928629 |
catgcctgccaaccagcttcaatggtgtt |
30928657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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