View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_3 (Length: 568)
Name: NF17873_low_3
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 32086622 - 32087179
Alignment:
| Q |
1 |
cgaagtttgatcgaaaaataaataaagtctaaagttatttagtgaatctcattaaccacttaattatttggttaaattattgttatttgatagtgtagta |
100 |
Q |
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| T |
32086622 |
cgaagttcgatcgaaaaataaataaagtttaaagttatttaataaagctcattaaccacttgattatttggttaaattattgttatttgatagtgtagta |
32086721 |
T |
|
| Q |
101 |
acctttttccctttcttgttaccaaatccacttgtgatgcacatcatcattttttaaaaacgaaattgtattatttgtataataatgctgccctatttga |
200 |
Q |
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| T |
32086722 |
acctttttccctttcttgttaccaaatccacttgtgatgcacatcatcattttttaaaaacgaaattgtattatttgtataataatgctgccctatttga |
32086821 |
T |
|
| Q |
201 |
ttggtgtaggggtgagttggatccacaatgcagttataattgctgaggatttgagtcatggacgtgttggcgatttggtgaag-aaaatctgaatgatac |
299 |
Q |
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| T |
32086822 |
ttggtgtaggggtgagttggatccacaatgcagttataattgctgaggatttgggtcatggacgtgttggcaatttggtgaagaaaaatctgaatgatac |
32086921 |
T |
|
| Q |
300 |
gtacataacaccaaaaattattggatagcagcaactactcctttgttgtttttgtgctgtcaattacttgtttggttggatgtgaaacaggacataaaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32086922 |
gtacataacaccaaaaattattggatagcagcaactactcctttgttgtttttgtgctgtcaattacttgtttggttggatgtgaa-----acataaaat |
32087016 |
T |
|
| Q |
400 |
aatttcgtattgggcaaaggctcaattctacaatgatcctggtgcaacttgatcggcggatcatcatatatacacgcctaaaatctcagtggataatggt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32087017 |
aatttcgtattgggcaaaggctcaattctacaatgatcctggtgcaacttgatcggcggatcatcatatatacacgcctaaaatttcagtggataatggt |
32087116 |
T |
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| Q |
500 |
tcagatagttaatttagtctaatctggatctcatattgtgaataaaggtctcatattcttcga |
562 |
Q |
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| T |
32087117 |
tcagataattaatttagtctaatctggatcttatattgtgaataaaggtctcatgttgttcga |
32087179 |
T |
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